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Additional output columns needed for Terra.bio #178

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jvhagey opened this issue Dec 11, 2024 · 0 comments
Open

Additional output columns needed for Terra.bio #178

jvhagey opened this issue Dec 11, 2024 · 0 comments
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Enhancement New feature or request

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jvhagey commented Dec 11, 2024

Is your feature request related to a problem? Please describe.
No issues, just need additional information to reduce the need for alternative pipeliens

Describe the solution you'd like

The following columns need to be added to Terra.bio output as requested by @bajwamoneeb (DE PHL)

  • amrfinderplus_amr_classes
  • amrfinderplus_amr_core_genes
  • amrfinderplus_amr_plus_genes
  • amrfinderplus_amr_subclasses
  • amrfinderplus_stress_genes
  • amrfinderplus_virulence_genes
  • seqsero2_predicted_serotype

Will be addressed in v2.2.0
@jvhagey jvhagey added the Enhancement New feature or request label Dec 11, 2024
@jvhagey jvhagey self-assigned this Dec 11, 2024
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