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@CCICB

Computational Biology Group @ Children's Cancer Insitute

The Computational Biology Group @ Children's Cancer Insitute develop better tools for precision medicine. WGS, RNAseq, multi-omics, health data

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  1. introme introme Public

    Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

    Shell 21 3

  2. SpliceVarDB SpliceVarDB Public

    An online database of variants functionally demonstrated to affect (or not affect) splicing.

    HTML 7

  3. 2020-hrPC-landscape 2020-hrPC-landscape Public

    development version for the Landscape paper

    R 5 3

  4. TCGAgistic TCGAgistic Public

    Easily access TCGA gistic data

    R 5

  5. vcf2mafR vcf2mafR Public

    Convert VCFs and VCF-related formats to MAF

    R 3 1

  6. CRUX CRUX Public

    R 2 1

Repositories

Showing 10 of 32 repositories
  • easyenrich Public

    Find elements that occur more frequently in one cohort compared to another

    CCICB/easyenrich’s past year of commit activity
    R 0 0 0 0 Updated Apr 15, 2025
  • SAVvy Public

    Splice-altering variant visualisation

    CCICB/SAVvy’s past year of commit activity
    JavaScript 0 MIT 0 1 0 Updated Apr 8, 2025
  • scarscape Public

    Extract tumorigenic scars from cancer omics data

    CCICB/scarscape’s past year of commit activity
    Rust 0 0 3 0 Updated Apr 1, 2025
  • Rtifact Public

    Identify samples with unexpectedly low RNA read support for DNA variants

    CCICB/Rtifact’s past year of commit activity
    R 0 0 9 0 Updated Mar 21, 2025
  • SpliceVarDB Public

    An online database of variants functionally demonstrated to affect (or not affect) splicing.

    CCICB/SpliceVarDB’s past year of commit activity
    HTML 7 AGPL-3.0 0 1 0 Updated Mar 20, 2025
  • JuncSeek Public
    CCICB/JuncSeek’s past year of commit activity
    Python 0 0 0 0 Updated Mar 20, 2025
  • introme Public

    Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

    CCICB/introme’s past year of commit activity
    Shell 21 GPL-3.0 3 2 0 Updated Mar 19, 2025
  • vcf2mafR Public

    Convert VCFs and VCF-related formats to MAF

    CCICB/vcf2mafR’s past year of commit activity
    R 3 1 11 0 Updated Feb 24, 2025
  • SplicingHeuristics2025 Public

    Supporting code for our 2025 Splicing Insights Manuscript (Sullivan et al)

    CCICB/SplicingHeuristics2025’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Feb 10, 2025
  • CBWebsite Public
    CCICB/CBWebsite’s past year of commit activity
    0 0 0 0 Updated Jan 10, 2025
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