multicoretsne

[Chesuour]

Good morning,sir:
I am a Chinese student.I'm reading your article recently and I'm very interested in your research. But there is something wrong with the use of code.I can't install multicoretsne.The below is the information.

Installing dependencies from Pipfile...

================================ 1/1 - 00:00:00
An error occurred while installing multicoretsne==0.1! Will try again.
Installing initially failed dependencies...
[InstallError]: File "d:\anaconda3\lib\site-packages\pipenv\cli\command.py", line 253, in install
[InstallError]: site_packages=state.site_packages
[InstallError]: File "d:\anaconda3\lib\site-packages\pipenv\core.py", line 2063, in do_install
[InstallError]: keep_outdated=keep_outdated
[InstallError]: File "d:\anaconda3\lib\site-packages\pipenv\core.py", line 1312, in do_init
[InstallError]: pypi_mirror=pypi_mirror,
[InstallError]: File "d:\anaconda3\lib\site-packages\pipenv\core.py", line 900, in do_install_dependencies
[InstallError]: retry_list, procs, failed_deps_queue, requirements_dir, **install_kwargs
[InstallError]: File "d:\anaconda3\lib\site-packages\pipenv\core.py", line 796, in batch_install
[InstallError]: _cleanup_procs(procs, failed_deps_queue, retry=retry)
[InstallError]: File "d:\anaconda3\lib\site-packages\pipenv\core.py", line 703, in _cleanup_procs
[InstallError]: raise exceptions.InstallError(c.dep.name, extra=err_lines)
[pipenv.exceptions.InstallError]: Collecting multicoretsne==0.1
[pipenv.exceptions.InstallError]: Using cached MulticoreTSNE-0.1.tar.gz (20 kB)
[pipenv.exceptions.InstallError]: Requirement already satisfied: numpy in c:\users\11.virtualenvs\topological-autoencoders->

master-0ayfqafo\lib\site-packages (from multicoretsne==0.1->-r c:\users\11\appdata\local\temp\pipenv-690j2s7

0-requirements\pipenv-7rw5i6kr-requirement.txt (line 1)) (1.20.3)

[pipenv.exceptions.InstallError]: Requirement already satisfied: cffi in c:\users\11.virtualenvs\topological-autoencoders-master-0ayfqafo\lib\site-packages (from multicoretsne==0.1->-r c:\users\11\appdata\local\temp\pipenv-690j2s70

-requirements\pipenv-7rw5i6kr-requirement.txt (line 1)) (1.14.5)

[pipenv.exceptions.InstallError]: Requirement already satisfied: pycparser in c:\users\11.virtualenvs\topological-autoencoders-master-0ayfqafo\lib\site-packages (from cffi->multicoretsne==0.1->-r c:\users\11\appdata\local\temp\pipe
nv-690j2s70-requirements\pipenv-7rw5i6kr-requirement.txt (line 1)) (2.20)
[pipenv.exceptions.InstallError]:** Building wheels for collected packages: multicoretsne
[pipenv.exceptions.InstallError]: Building wheel for multicoretsne (setup.py): started
[pipenv.exceptions.InstallError]: Building wheel for multicoretsne (setup.py): finished with status 'error'
[pipenv.exceptions.InstallError]: ERROR: Command errored out with exit status 1:
[pipenv.exceptions.InstallError]: command: 'C:\Users\11.virtualenvs\topological-autoencoders-master-0aYfqAfO\Scripts\python.exe' -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\11\AppData\Local\
Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16\setup.py'"'"'; file='"'"'C:\Users\11\AppData\Local\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16\setup.py'"'"';f = ge
tattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file
, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\11\AppData\Local\Temp\pip-wheel-h6snep7e'
[pipenv.exceptions.InstallError]: cwd: C:\Users\11\AppData\Local\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16
[pipenv.exceptions.InstallError]: Complete output (29 lines):
[pipenv.exceptions.InstallError]: running bdist_wheel
[pipenv.exceptions.InstallError]: running build
[pipenv.exceptions.InstallError]: running build_py
[pipenv.exceptions.InstallError]: creating build
[pipenv.exceptions.InstallError]: creating build\lib.win-amd64-3.7
[pipenv.exceptions.InstallError]: creating build\lib.win-amd64-3.7\MulticoreTSNE
[pipenv.exceptions.InstallError]: copying MulticoreTSNE_init.py -> build\lib.win-amd64-3.7\MulticoreTSNE
[pipenv.exceptions.InstallError]: creating build\lib.win-amd64-3.7\MulticoreTSNE\tests
[pipenv.exceptions.InstallError]: copying MulticoreTSNE\tests\test_base.py -> build\lib.win-amd64-3.7\MulticoreTSNE\tests
[pipenv.exceptions.InstallError]: copying MulticoreTSNE\tests_init.py -> build\lib.win-amd64-3.7\MulticoreTSNE\tests
[pipenv.exceptions.InstallError]: running egg_info
[pipenv.exceptions.InstallError]: writing MulticoreTSNE.egg-info\PKG-INFO
[pipenv.exceptions.InstallError]: writing dependency_links to MulticoreTSNE.egg-info\dependency_links.txt
[pipenv.exceptions.InstallError]: writing requirements to MulticoreTSNE.egg-info\requires.txt
[pipenv.exceptions.InstallError]: writing top-level names to MulticoreTSNE.egg-info\top_level.txt
[pipenv.exceptions.InstallError]: reading manifest file 'MulticoreTSNE.egg-info\SOURCES.txt'
[pipenv.exceptions.InstallError]: reading manifest template 'MANIFEST.in'
[pipenv.exceptions.InstallError]: adding license file 'LICENSE.txt'
[pipenv.exceptions.InstallError]: writing manifest file 'MulticoreTSNE.egg-info\SOURCES.txt'
[pipenv.exceptions.InstallError]: warning: build_py: byte-compiling is disabled, skipping.
[pipenv.exceptions.InstallError]:
[pipenv.exceptions.InstallError]: running build_ext
[pipenv.exceptions.InstallError]: cmake version 3.20.3
[pipenv.exceptions.InstallError]:
[pipenv.exceptions.InstallError]: CMake suite maintained and supported by Kitware (kitware.com/cmake).
[pipenv.exceptions.InstallError]: CMake Error: Unknown argument --
[pipenv.exceptions.InstallError]: CMake Error: Run 'cmake --help' for all supported options.
[pipenv.exceptions.InstallError]:
[pipenv.exceptions.InstallError]: ERROR: Cannot generate Makefile. See above errors.
[pipenv.exceptions.InstallError]: ----------------------------------------
[pipenv.exceptions.InstallError]: ERROR: Failed building wheel for multicoretsne
[pipenv.exceptions.InstallError]: Running setup.py clean for multicoretsne
[pipenv.exceptions.InstallError]: Failed to build multicoretsne
[pipenv.exceptions.InstallError]: Installing collected packages: multicoretsne
[pipenv.exceptions.InstallError]: Running setup.py install for multicoretsne: started
[pipenv.exceptions.InstallError]: Running setup.py install for multicoretsne: finished with status 'error'
[pipenv.exceptions.InstallError]: ERROR: Command errored out with exit status 1:
[pipenv.exceptions.InstallError]: command: 'C:\Users\11.virtualenvs\topological-autoencoders-master-0aYfqAfO\Scripts\python.exe' -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\11\AppData\Local
\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16\setup.py'"'"'; file='"'"'C:\Users\11\AppData\Local\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16\setup.py'"'"';f =
getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, fil
e, '"'"'exec'"'"'))' install --record 'C:\Users\11\AppData\Local\Temp\pip-record-8yv_r9yl\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\11.virtualenvs\topological-autoencoders-maste
r-0aYfqAfO\include\site\python3.7\multicoretsne'
[pipenv.exceptions.InstallError]: cwd: C:\Users\11\AppData\Local\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16
[pipenv.exceptions.InstallError]: Complete output (29 lines):
[pipenv.exceptions.InstallError]: running install
[pipenv.exceptions.InstallError]: running build
[pipenv.exceptions.InstallError]: running build_py
[pipenv.exceptions.InstallError]: creating build
[pipenv.exceptions.InstallError]: creating build\lib.win-amd64-3.7
[pipenv.exceptions.InstallError]: creating build\lib.win-amd64-3.7\MulticoreTSNE
[pipenv.exceptions.InstallError]: copying MulticoreTSNE_init_.py -> build\lib.win-amd64-3.7\MulticoreTSNE
[pipenv.exceptions.InstallError]: creating build\lib.win-amd64-3.7\MulticoreTSNE\tests
[pipenv.exceptions.InstallError]: copying MulticoreTSNE\tests\test_base.py -> build\lib.win-amd64-3.7\MulticoreTSNE\tests
[pipenv.exceptions.InstallError]: copying MulticoreTSNE\tests_init_.py -> build\lib.win-amd64-3.7\MulticoreTSNE\tests
[pipenv.exceptions.InstallError]: running egg_info
[pipenv.exceptions.InstallError]: writing MulticoreTSNE.egg-info\PKG-INFO
[pipenv.exceptions.InstallError]: writing dependency_links to MulticoreTSNE.egg-info\dependency_links.txt
[pipenv.exceptions.InstallError]: writing requirements to MulticoreTSNE.egg-info\requires.txt
[pipenv.exceptions.InstallError]: writing top-level names to MulticoreTSNE.egg-info\top_level.txt
[pipenv.exceptions.InstallError]: reading manifest file 'MulticoreTSNE.egg-info\SOURCES.txt'
[pipenv.exceptions.InstallError]: reading manifest template 'MANIFEST.in'
[pipenv.exceptions.InstallError]: adding license file 'LICENSE.txt'
[pipenv.exceptions.InstallError]: writing manifest file 'MulticoreTSNE.egg-info\SOURCES.txt'
[pipenv.exceptions.InstallError]: warning: build_py: byte-compiling is disabled, skipping.
[pipenv.exceptions.InstallError]:
[pipenv.exceptions.InstallError]: running build_ext
[pipenv.exceptions.InstallError]: cmake version 3.20.3
[pipenv.exceptions.InstallError]:
[pipenv.exceptions.InstallError]: CMake suite maintained and supported by Kitware (kitware.com/cmake).
[pipenv.exceptions.InstallError]: CMake Error: Unknown argument --
[pipenv.exceptions.InstallError]: CMake Error: Run 'cmake --help' for all supported options.
[pipenv.exceptions.InstallError]:
[pipenv.exceptions.InstallError]: ERROR: Cannot generate Makefile. See above errors.
[pipenv.exceptions.InstallError]: ----------------------------------------
[pipenv.exceptions.InstallError]: ERROR: Command errored out with exit status 1: 'C:\Users\11.virtualenvs\topological-autoencoders-master-0aYfqAfO\Scripts\python.exe' -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '
"'"'C:\Users\11\AppData\Local\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91ecb877e4c62a16\setup.py'"'"'; file='"'"'C:\Users\11\AppData\Local\Temp\pip-install-ynrf4fmk\multicoretsne_89da54d44b404fda91e
cb877e4c62a16\setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f
.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Users\11\AppData\Local\Temp\pip-record-8yv_r9yl\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\11.virtualen
vs\topological-autoencoders-master-0aYfqAfO\include\site\python3.7\multicoretsne' Check the logs for full command output.
ERROR: Couldn't install package: multicoretsne
Package installation failed...
================================ 0/1 - 00:00:03`

[Pseudomanifold]

Thanks for raising this issue. This problem is not caused by our code but by an upstream package called multicoretsne. The error message indicates that your CMakeinstallation has a problem in handling an argument in the installation instructions. See issue #81 of the multicoretsne package for more details. I see two potential workarounds:

1. Remove the dependency and build the package without it.
2. Downgrade your CMake installation.

Hope that helps!

[Chesuour]

Thank you,I run sucessfully!