Skip to content
@BorgwardtLab

Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

Pinned Loading

  1. TOGL TOGL Public

    Topological Graph Neural Networks (ICLR 2022)

    Python 118 22

  2. SAT SAT Public

    Official Pytorch code for Structure-Aware Transformer.

    Python 249 37

Repositories

Showing 10 of 104 repositories
  • ConformalAMR Public

    Main repository for "Antimicrobial drug recommendation from MALDI-TOF MS with statistical guarantees using conformal prediction"

    BorgwardtLab/ConformalAMR’s past year of commit activity
    Python 0 0 0 0 Updated Nov 5, 2024
  • NodeIndividualizedGNNs Public

    Code and Data for the paper: On the Expressivity and Sample Complexity of Node-Individualized Graph Neural Networks (NeurIPS 2024)

    BorgwardtLab/NodeIndividualizedGNNs’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 29, 2024
  • PST Public

    Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge

    BorgwardtLab/PST’s past year of commit activity
    Python 33 BSD-3-Clause 1 0 1 Updated Oct 17, 2024
  • PCR-bias Public
    BorgwardtLab/PCR-bias’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 9, 2024
  • WWL Public

    Wasserstein Weisfeiler-Lehman Graph Kernels

    BorgwardtLab/WWL’s past year of commit activity
    Python 78 BSD-3-Clause 18 4 0 Updated Sep 1, 2024
  • GraphMatchingSubstitutionMatrices Public

    Code and Data for the paper: Structure- and Function-Aware Substitution Matrices via Learnable Graph Matching (RECOMB 2024 & ICML 2024 Differentiable Almost Everything Workshop)

    BorgwardtLab/GraphMatchingSubstitutionMatrices’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jul 28, 2024
  • proteinshake Public

    Protein structure datasets for machine learning.

    BorgwardtLab/proteinshake’s past year of commit activity
    Python 103 BSD-3-Clause 9 84 2 Updated Jul 3, 2024
  • WTK Public

    A Wasserstein Subsequence Kernel for Time Series.

    BorgwardtLab/WTK’s past year of commit activity
    Python 21 MIT 7 0 1 Updated Jun 17, 2024
  • CARPE Public
    BorgwardtLab/CARPE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 15, 2024
  • NeuralWalker Public

    Official Pytorch implementation of NeuralWalker

    BorgwardtLab/NeuralWalker’s past year of commit activity
    Python 24 BSD-3-Clause 2 0 0 Updated Jun 6, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…