Merge pull request #212 from BodenmillerGroup/enhance_ERRMSG_for_miss…

…sing_ROI

Enhance errmsg for misssing roi + temp solution for cellprofiler isntallaiton

CHANGELOG.md

@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.16.2] - 2023-08-15
+
+### Changed
+
+  - Enhanced error handling for missing ROIs [#184](https://github.com/BodenmillerGroup/steinbock/issues/184)
+
 ## [0.16.1] - 2023-05-07
 
 ### Fixed

Dockerfile

@@ -17,8 +17,6 @@ ARG CELLPROFILER_VERSION="4.2.5"
 ARG CELLPROFILER_PLUGINS_VERSION="4.2.1"
 ARG CELLPOSE_VERSION="2.2"
 
-
-
 ########## TENSORFLOW ##########
 
 FROM --platform=linux/amd64 tensorflow/tensorflow:${TENSORFLOW_VERSION} AS tensorflow
@@ -137,7 +135,7 @@ RUN curl -SsO https://extras.wxpython.org/wxPython4/extras/linux/gtk3/ubuntu-20.
     python -m pip install wxPython-4.1.0-cp38-cp38-linux_x86_64.whl && \
     rm wxPython-4.1.0-cp38-cp38-linux_x86_64.whl
 
-RUN python -m pip install "cellprofiler==${CELLPROFILER_VERSION}"
+RUN python -m pip install git+https://github.com/CellProfiler/[email protected]
 
 RUN mkdir /opt/cellprofiler_plugins && \
     curl -SsL "https://github.com/BodenmillerGroup/ImcPluginsCP/archive/refs/tags/v${CELLPROFILER_PLUGINS_VERSION}.tar.gz" | tar -C /opt/cellprofiler_plugins -xzf - "ImcPluginsCP-${CELLPROFILER_PLUGINS_VERSION}/plugins/" --strip-components=2