Skip to content

Cellprofiler 4 and `imctools v1` release
Compare
Choose a tag to compare
@votti votti released this 15 Dec 16:44
· 123 commits to main since this release
v2.0
c920c43
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

This release requires Cellprofiler 4 together with the ImcPluginsCP version > v4.2.1 (https://github.com/BodenmillerGroup/ImcPluginsCP/releases). Further, the example scripts rely on imctools v2.

Breaking changes:

  • Imctools v2 changed the naming scheme of files - if you use this version you might need to adapt downstream scripts to the new file naming
    -> Due to the new naming scheme this also requires the re-conversion of .mcd folders to ome

This release adds the following improvements:

  • Updated documentation
  • Adds var_Cells.csv containing metadata for the measurements
  • Adds panel to cpout folder
Assets 2
Loading