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@BoHuangLab

Bo Huang Lab

Official GitHub Repo for the Bo Huang Lab at UCSF
README 
We are an interdisciplinary lab based at [UCSF](https://www.ucsf.edu). We are particularly seeking talents in optical engineering, machine learning, and cellular microscopy. [Please reach out to Bo if you're interested in collaborating!](http://huanglab.ucsf.edu/Contact.html)

See our [HuggingFace](https://huggingface.co/HuangLab) for model checkpoints.

For more information, visit our lab website at [http://huanglab.ucsf.edu/].

Popular repositories Loading

  1. Protein-Localization-Transformer Protein-Localization-Transformer Public

    Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction

    Python 28 3

  2. CELL-E_2 CELL-E_2 Public

    Multimodal encoder-only transformer model for image-based protein predictions

    Python 14 1

  3. Transfer-Learning-Denoising Transfer-Learning-Denoising Public

    Denoising Via Self Supervised Transfer Learning

    Jupyter Notebook 12 1

  4. Wynton-Jupyter-Notebook-Server Wynton-Jupyter-Notebook-Server Public

    Forked from EmaadKhwaja/Wynton-Jupyter-Notebook-Server

    Instructions on running a jupyter notebook instance on UCSF High Performance Computer Cluster

    Python 2

  5. Cellular_Intensity_Analysis Cellular_Intensity_Analysis Public

    These macros were generated to analyze total cell intensity from fluorescence images in ImageJ

    Jupyter Notebook 1 2

  6. CP-Segmentation CP-Segmentation Public

    Segmentation for Huang Lab based on CellPose

    Python 1

Repositories

Showing 10 of 12 repositories
  • CELL-E_2 Public

    Multimodal encoder-only transformer model for image-based protein predictions

    BoHuangLab/CELL-E_2’s past year of commit activity
    Python 14 MIT 1 0 0 Updated Dec 12, 2023
  • Protein-Localization-Transformer Public

    Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction

    BoHuangLab/Protein-Localization-Transformer’s past year of commit activity
    Python 28 MIT 3 0 0 Updated Oct 1, 2023
  • altFACS Public

    The alternative FACS module written for our splitHalo paper.

    BoHuangLab/altFACS’s past year of commit activity
    Jupyter Notebook 0 MIT 0 8 (2 issues need help) 2 Updated Jul 6, 2023
  • .github Public
    BoHuangLab/.github’s past year of commit activity
    0 0 0 0 Updated May 16, 2023
  • Cell-Analysis-Worksheets Public

    Jupyter Notebooks to Learn Image Analysis for Cellular Microscopy

    BoHuangLab/Cell-Analysis-Worksheets’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Jul 30, 2021
  • CP-Segmentation Public

    Segmentation for Huang Lab based on CellPose

    BoHuangLab/CP-Segmentation’s past year of commit activity
    Python 1 0 0 0 Updated Mar 2, 2021
  • EML4-ALK_FRAP Public

    Data and Scripts for EML4-ALK FRAP 2020

    BoHuangLab/EML4-ALK_FRAP’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Feb 17, 2021
  • Transfer-Learning-Denoising Public

    Denoising Via Self Supervised Transfer Learning

    BoHuangLab/Transfer-Learning-Denoising’s past year of commit activity
    Jupyter Notebook 12 MIT 1 0 0 Updated Feb 16, 2021
  • RT-qPCR Public

    This workshop will run through the concepts and techniques for mRNA quantification by Reverse Transcription qPCR

    BoHuangLab/RT-qPCR’s past year of commit activity
    Jupyter Notebook 0 MIT 1 1 0 Updated Nov 6, 2020
  • Cellular_Intensity_Analysis Public

    These macros were generated to analyze total cell intensity from fluorescence images in ImageJ

    BoHuangLab/Cellular_Intensity_Analysis’s past year of commit activity
    Jupyter Notebook 1 2 1 0 Updated Oct 20, 2020
View all repositories

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