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B3.1 #184

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B3.1 #184

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Commits on Feb 20, 2023

  1. Removing some addons that are not needed anymore.

    @marwan-abdellah
    marwan-abdellah committed Feb 20, 2023
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  2. Minor bug fixes.

    @marwan-abdellah
    marwan-abdellah committed Feb 20, 2023
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  3. Adding a simple utility to visualize color-coded synapses.

    @marwan-abdellah
    marwan-abdellah committed Feb 20, 2023
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Commits on Feb 21, 2023

  1. Addign the custom synaptic visualization.

    @marwan-abdellah
    marwan-abdellah committed Feb 21, 2023
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  2. Visualizing excitatory and inhibitory synapses.

    @marwan-abdellah
    marwan-abdellah committed Feb 21, 2023
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  3. Using dicts instead of lists.

    @marwan-abdellah
    marwan-abdellah committed Feb 21, 2023
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Commits on Feb 22, 2023

  1. Adding new functions for synapse visualization.

    @marwan-abdellah
    marwan-abdellah committed Feb 22, 2023
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Commits on Feb 23, 2023

  1. Using particle system to visualize large amounts of synapses.

    @marwan-abdellah
    marwan-abdellah committed Feb 23, 2023
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Commits on Feb 27, 2023

  1. Minor improvements in the particle system.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  2. Renaming the synapses add-ons untill further notice.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  3. Minor clean ups.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  4. Displaying the excitatory and inhibitory synapses.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  5. Refactoring the synaptics.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  6. Minor fixes.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  7. Adding option to make unifying radius for all the branches.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  8. Minor.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  9. Visualizing synapses based on pre- and post-synaptic mtypes.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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  10. Adding the visualization of the etypes as well.

    @marwan-abdellah
    marwan-abdellah committed Feb 27, 2023
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Commits on Feb 28, 2023

  1. Adding support to change the colors of the individual arbors of the s… 

    …ame type.
    @marwan-abdellah
    marwan-abdellah committed Feb 28, 2023
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  2. Adding the synaptic pathways usecase.

    @marwan-abdellah
    marwan-abdellah committed Feb 28, 2023
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Commits on Mar 1, 2023

  1. Adjusting the spines orientation.

    @marwan-abdellah
    marwan-abdellah committed Mar 1, 2023
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  2. Synaptic pathways.

    @marwan-abdellah
    marwan-abdellah committed Mar 1, 2023
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  3. Starting to add the synaptics interface.

    @marwan-abdellah
    marwan-abdellah committed Mar 1, 2023
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Commits on Mar 2, 2023

  1. Adjusting the synapses loading UI and preparing to the implementation.

    @marwan-abdellah
    marwan-abdellah committed Mar 2, 2023
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Commits on Mar 6, 2023

  1. Improving circuit loading and completing the synapse visualization op… 

    …tions.
    @marwan-abdellah
    marwan-abdellah committed Mar 6, 2023
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  2. Further cleanups for the I/O panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 6, 2023
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  3. Minor.

    @marwan-abdellah
    marwan-abdellah committed Mar 6, 2023
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  4. Improving the loading mechanism.

    @haitham-shaban
    haitham-shaban committed Mar 6, 2023
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Commits on Mar 7, 2023

  1. Cleaning the loading.

    @marwan-abdellah
    marwan-abdellah committed Mar 7, 2023
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  2. Color coding by types.

    @marwan-abdellah
    marwan-abdellah committed Mar 7, 2023
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Commits on Mar 8, 2023

  1. Minor.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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  2. Further use cases and cleanups.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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  3. Adding neuron to the scene with the synapses.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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  4. Cleaning the UI.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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  5. Minor tweaks.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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  6. Minor cleanups.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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  7. Updating the copyrights.

    @marwan-abdellah
    marwan-abdellah committed Mar 8, 2023
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Commits on Mar 12, 2023

  1. Addressing the centering issue.

    @haitham-shaban
    haitham-shaban committed Mar 12, 2023
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Commits on Mar 13, 2023

  1. Fixing the synaptic pathways.

    @marwan-abdellah
    marwan-abdellah committed Mar 13, 2023
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Commits on Mar 14, 2023

  1. Adding the synaptic pair options and synapses counts.

    @marwan-abdellah
    marwan-abdellah committed Mar 14, 2023
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  2. Synaptics drawing.

    @marwan-abdellah
    marwan-abdellah committed Mar 14, 2023
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Commits on Mar 15, 2023

  1. Refactoring the interface.

    @marwan-abdellah
    marwan-abdellah committed Mar 15, 2023
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  2. Refactoring the morphology panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 15, 2023
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  3. Minor.

    @haitham-shaban
    haitham-shaban committed Mar 15, 2023
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Commits on Mar 16, 2023

  1. Cleaning the morphology panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 16, 2023
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  2. Cleanups.

    @marwan-abdellah
    marwan-abdellah committed Mar 16, 2023
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  3. More improvements.

    @marwan-abdellah
    marwan-abdellah committed Mar 16, 2023
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  4. Collections.

    @marwan-abdellah
    marwan-abdellah committed Mar 16, 2023
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  5. Minor.

    @marwan-abdellah
    marwan-abdellah committed Mar 16, 2023
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Commits on Mar 19, 2023

  1. Minor.

    @haitham-shaban
    haitham-shaban committed Mar 19, 2023
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Commits on Mar 20, 2023

  1. Resolving the dendrogram issue.

    @marwan-abdellah
    marwan-abdellah committed Mar 20, 2023
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  2. Adjusting the morphology reconstruction options.

    @marwan-abdellah
    marwan-abdellah committed Mar 20, 2023
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  3. Cleaning the meshing panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 20, 2023
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  4. Meshing.

    @marwan-abdellah
    marwan-abdellah committed Mar 20, 2023
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Commits on Mar 21, 2023

  1. About page.

    @marwan-abdellah
    marwan-abdellah committed Mar 21, 2023
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  2. Updating OS.

    @marwan-abdellah
    marwan-abdellah committed Mar 21, 2023
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  3. Analysis results.

    @marwan-abdellah
    marwan-abdellah committed Mar 21, 2023
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  4. Analysis.

    @marwan-abdellah
    marwan-abdellah committed Mar 21, 2023
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  5. Refactoring the soma panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 21, 2023
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  6. Soma reconstruction.

    @marwan-abdellah
    marwan-abdellah committed Mar 21, 2023
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Commits on Mar 22, 2023

  1. Minor updates.

    @marwan-abdellah
    marwan-abdellah committed Mar 22, 2023
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Commits on Mar 24, 2023

  1. Pathways.

    @marwan-abdellah
    marwan-abdellah committed Mar 24, 2023
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  2. Minor.

    @marwan-abdellah
    marwan-abdellah committed Mar 24, 2023
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  3. Synaptics.

    @marwan-abdellah
    marwan-abdellah committed Mar 24, 2023
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Commits on Mar 27, 2023

  1. Synaptics. Target case.

    @marwan-abdellah
    marwan-abdellah committed Mar 27, 2023
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  2. Further cleanups, synaptics.

    @marwan-abdellah
    marwan-abdellah committed Mar 27, 2023
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  3. Rendering scale bar fix.

    @marwan-abdellah
    marwan-abdellah committed Mar 27, 2023
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  4. Target.

    @marwan-abdellah
    marwan-abdellah committed Mar 27, 2023
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  5. Projection.

    @marwan-abdellah
    marwan-abdellah committed Mar 27, 2023
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Commits on Mar 28, 2023

  1. Refactoring the edit panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  2. Adding libsonata class.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  3. Edits.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  4. Minor.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  5. Adjusting the loading from circuits.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  6. Documenting the BBP circuit.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  7. Cleaning the globals.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  8. Synapse generation.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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  9. Fixing the soma center issue.

    @marwan-abdellah
    marwan-abdellah committed Mar 28, 2023
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Commits on Mar 29, 2023

  1. Adding the voxelization builder.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  2. Use the soma from the meshing toolbox.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  3. Fixing the soma center issue.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  4. Adjusting the mesh generation panel.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  5. Implemented the connected sections method in the Meshing builders.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  6. Adding correct references.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  7. Minor.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  8. Headers.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  9. Dates.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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  10. Branching ops.

    @marwan-abdellah
    marwan-abdellah committed Mar 29, 2023
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Commits on Mar 30, 2023

  1. Refactoring and cleaning the meshing builders.

    @haitham-shaban
    haitham-shaban committed Mar 30, 2023
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  2. Minor cleanups.

    @haitham-shaban
    haitham-shaban committed Mar 30, 2023
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Commits on Mar 31, 2023

  1. Minor additions in the meshing and morphology interface.

    @haitham-shaban
    haitham-shaban committed Mar 31, 2023
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Commits on Apr 3, 2023

  1. Morphology toolbox.

    @haitham-shaban
    haitham-shaban committed Apr 3, 2023
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Commits on Apr 4, 2023

  1. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 4, 2023
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Commits on Apr 12, 2023

  1. Cleaning the material generation and storage.

    @marwan-abdellah
    marwan-abdellah committed Apr 12, 2023
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Commits on Apr 13, 2023

  1. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 13, 2023
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Commits on Apr 17, 2023

  1. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  2. Cleaning the morphology builder.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  3. Cleanups.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  4. Adjusting the names of the materials.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  5. Adjusting the color.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  6. Cleanups.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  7. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  8. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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  9. Adjusting the MetaBuilder.

    @marwan-abdellah
    marwan-abdellah committed Apr 17, 2023
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Commits on Apr 18, 2023

  1. Fixing some issues in the endfeet visualization and mesh geenrators.

    @marwan-abdellah
    marwan-abdellah committed Apr 18, 2023
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Commits on Apr 24, 2023

  1. Adjusting the morphology format.

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    marwan-abdellah committed Apr 24, 2023
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  2. Fixing a few bugs in the mesh builders and the Synaptics.

    @marwan-abdellah
    marwan-abdellah committed Apr 24, 2023
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Commits on Apr 25, 2023

  1. Meshes interface.

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    marwan-abdellah committed Apr 25, 2023
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  2. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 25, 2023
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  3. Union builder roughness.

    @marwan-abdellah
    marwan-abdellah committed Apr 25, 2023
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  4. Adjusting the spine code.

    @marwan-abdellah
    marwan-abdellah committed Apr 25, 2023
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  5. Spine building.

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    marwan-abdellah committed Apr 25, 2023
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  6. Minor.

    @marwan-abdellah
    marwan-abdellah committed Apr 25, 2023
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Commits on Apr 26, 2023

  1. Minor adjustment to the union builder.

    @marwan-abdellah
    marwan-abdellah committed Apr 26, 2023
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Commits on Apr 27, 2023

  1. Adjusting the circuit spines code.

    @marwan-abdellah
    marwan-abdellah committed Apr 27, 2023
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  2. Synapses and spines.

    @marwan-abdellah
    marwan-abdellah committed Apr 27, 2023
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  3. Adjusting the synaptics code.

    @marwan-abdellah
    marwan-abdellah committed Apr 27, 2023
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  4. Some synaptics issue.

    @marwan-abdellah
    marwan-abdellah committed Apr 27, 2023
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  5. Synaptic pathways form script.

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    marwan-abdellah committed Apr 27, 2023
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Commits on May 8, 2023

  1. Adding a new file to visualize groups of synaptic pathways.

    @marwan-abdellah
    marwan-abdellah committed May 8, 2023
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  2. Visualize multiple synapses.

    @marwan-abdellah
    marwan-abdellah committed May 8, 2023
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Commits on May 10, 2023

  1. Fixing the synaptics add-on.

    @marwan-abdellah
    marwan-abdellah committed May 10, 2023
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  2. Merge branch 'master' into b3.1

    @marwan-abdellah
    marwan-abdellah authored May 10, 2023
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