1495 Bioconductor sotware binaries built
3190 Other dependency binaries built
53 failed packages
640 unclaimed packages
Package | Status | BBS Status | Log | Known Error |
---|---|---|---|---|
BASiCStan | Failed | OK | Build Log | Error unknown |
BGmix | Failed | ERROR | Build Log | Error unknown |
BioNetStat | Failed | OK | Build Log | Error unknown |
BUMHMM | Failed | OK | Build Log | Error unknown |
cellHTS2 | Failed | OK | Build Log | Error unknown |
combi | Failed | OK | Build Log | Error unknown |
coseq | Failed | OK | Build Log | Error unknown |
CoSIA | Failed | OK | Build Log | Error unknown |
DELocal | Failed | OK | Build Log | Error unknown |
distinct | Failed | OK | Build Log | Error unknown |
DOSE | Failed | OK | Build Log | Error unknown |
GBScleanR | Failed | OK | Build Log | Error unknown |
heatmaps | Failed | OK | Build Log | Error unknown |
imcRtools | Failed | OK | Build Log | Error unknown |
InterMineR | Failed | OK | Build Log | Error unknown |
memes | Failed | OK | Build Log | Error unknown |
methylscaper | Failed | OK | Build Log | Error unknown |
MsExperiment | Failed | ERROR | Build Log | Error unknown |
msqrob2 | Failed | OK | Build Log | Error unknown |
MultiDataSet | Failed | OK | Build Log | Error unknown |
multiGSEA | Failed | OK | Build Log | Error unknown |
NetSAM | Failed | OK | Build Log | Error unknown |
OmicsLonDA | Failed | ERROR | Build Log | Error unknown |
openPrimeR | Failed | OK | Build Log | Error unknown |
pairkat | Failed | OK | Build Log | Error unknown |
planttfhunter | Failed | OK | Build Log | Error unknown |
pqsfinder | Failed | OK | Build Log | Error unknown |
PSMatch | Failed | OK | Build Log | Error unknown |
scGPS | Failed | OK | Build Log | Failed R dependency: 'GO.db' |
ViSEAGO | Failed | OK | Build Log | Failed R dependency: 'UpSetR' |
nanotatoR | Failed | OK | Build Log | Failed R dependency: 'VarfromPDB'. CRAN Package 'VarfromPDB' archived. Extracted text: Archived on 2024-03-24 as requires archived package 'XML2R'. |
cytoviewer | Failed | OK | Build Log | Failed R dependency: 'archive' |
autonomics | Failed | OK | Build Log | Failed R dependency: 'assertive'. CRAN Package 'assertive' archived. Extracted text: Archived on 2023-10-24 as requires archived package 'assertive.properties' |
isomiRs | Failed | OK | Build Log | Failed R dependency: 'assertive.sets'. CRAN Package 'assertive.sets' archived. Extracted text: Archived on 2024-04-12 as requires archived package 'assertive.base'. |
MicrobiotaProcess | Failed | OK | Build Log | Failed R dependency: 'biomformat' |
ccmap | Failed | OK | Build Log | Failed R dependency: 'ccdata' |
Pi | Failed | OK | Build Log | Failed R dependency: 'dnet'. CRAN Package 'dnet' archived. Extracted text: Archived on 2024-01-30 as email to the maintainer is undeliverable. |
RandomWalkRestartMH | Failed | OK | Build Log | Failed R dependency: 'dnet'. CRAN Package 'dnet' archived. Extracted text: Archived on 2024-01-30 as email to the maintainer is undeliverable. |
Voyager | Failed | OK | Build Log | Failed R dependency: 'ggnewscale' |
tscR | Failed | ERROR | Build Log | Failed R dependency: 'kmlShape'. CRAN Package 'kmlShape' archived. Extracted text: Archived on 2022-12-19 as issues were not corrected despite reminders. |
easier | Failed | OK | Build Log | Failed R dependency: 'lme4' |
MBECS | Failed | OK | Build Log | Failed R dependency: 'lme4' |
microbiomeExplorer | Failed | OK | Build Log | Failed R dependency: 'lme4' |
MWASTools | Failed | OK | Build Log | Failed R dependency: 'lme4' |
PhosR | Failed | OK | Build Log | Failed R dependency: 'lme4' |
SeqVarTools | Failed | OK | Build Log | Failed R dependency: 'lme4' |
GEOexplorer | Failed | OK | Build Log | Failed R dependency: 'maptools'. CRAN Package 'maptools' archived. Extracted text: Archived on 2023-10-16 at the request of the maintainer. Consider using 'sf' or 'terra' instead. |
attract | Failed | OK | Build Log | Failed R dependency: 'reactome.db' |
RedisParam | Failed | OK | Build Log | Failed R dependency: 'redux' |
flowDensity | Failed | OK | Build Log | Failed R dependency: 'rgeos'. CRAN Package 'rgeos' archived. Extracted text: Archived on 2023-10-16 at the request of the maintainer. Consider using 'sf' or 'terra' instead. |
BioNAR | Failed | OK | Build Log | Failed R dependency: 'synaptome.db' |
optimalFlow | Failed | OK | Build Log | Failed R dependency: 'transport' |
RCy3 | Failed | OK | Build Log | Failed R dependency: 'uchardet'. CRAN Package 'uchardet' archived. Extracted text: Archived on 2023-10-29 as check problems were not corrected in time. |
Package | Status | Blocked By |
---|---|---|
ACE | Unclaimed | Incomplete Bioc dependencies: QDNAseq, Rsamtools. |
ADAM | Unclaimed | |
ADAMgui | Unclaimed | Incomplete Bioc dependencies: ADAM. |
AgiMicroRna | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, ReportingTools, Rsamtools, VariantAnnotation, affycoretools, biovizBase, ensembldb, ggbio, oligoClasses, rtracklayer. |
AHMassBank | Unclaimed | Incomplete Bioc dependencies: AnnotationHubData, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, rtracklayer. |
alabaster | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, alabaster.vcf, rtracklayer. |
alabaster.vcf | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
AllelicImbalance | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
alpine | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
AMARETTO | Unclaimed | |
amplican | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
ANCOMBC | Unclaimed | Incomplete Bioc dependencies: TreeSummarizedExperiment, mia. |
AneuFinder | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
animalcules | Unclaimed | |
annmap | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
APAlyzer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
APL | Unclaimed | |
appreci8R | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicScores, OrganismDbi, Rsamtools, VariantAnnotation, rtracklayer. |
ArrayExpress | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
arrayMvout | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer. |
arrayQualityMetrics | Unclaimed | Incomplete Bioc dependencies: beadarray. |
ASICS | Unclaimed | Incomplete Bioc dependencies: MultiDataSet, ropls. |
ASpli | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
AssessORF | Unclaimed | |
ATACCoGAPS | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, CoGAPS, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, TFBSTools, chromVAR, motifmatchr, projectR, rGREAT, rtracklayer. |
ATACseqQC | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, ChIPpeakAnno, GenomicAlignments, GenomicFeatures, GenomicScores, Rsamtools, TFBSTools, ensembldb, motifStack, regioneR, rtracklayer. |
ATACseqTFEA | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, motifmatchr, rtracklayer. |
atena | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
atSNP | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, motifStack, rtracklayer. |
BaalChIP | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
BadRegionFinder | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
bambu | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
bandle | Unclaimed | Incomplete Bioc dependencies: MLInterfaces, pRoloc. |
basecallQC | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
Basic4Cseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
BasicSTARRseq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
BBCAnalyzer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
beadarray | Unclaimed | |
BEAT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, ShortRead, rtracklayer. |
benchdamic | Unclaimed | Incomplete Bioc dependencies: ANCOMBC, TreeSummarizedExperiment, mia, zinbwave. |
BgeeCall | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
bigmelon | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer, wateRmelon. |
BindingSiteFinder | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
bioCancer | Unclaimed | Incomplete Bioc dependencies: DOSE, ReactomePA, clusterProfiler, enrichplot. |
BiocOncoTK | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
biosigner | Unclaimed | Incomplete Bioc dependencies: MultiDataSet, ropls. |
biscuiteer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, QDNAseq, Rsamtools, VariantAnnotation, annotatr, bsseq, bumphunter, dmrseq, regioneR, rtracklayer. |
BiSeq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
blacksheepr | Unclaimed | Incomplete Bioc dependencies: DEXSeq, Rsamtools. |
blima | Unclaimed | Incomplete Bioc dependencies: beadarray. |
bnbc | Unclaimed | |
BOBaFIT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, plyranges, rtracklayer. |
borealis | Unclaimed | Incomplete Bioc dependencies: BSgenome, DSS, GenomicAlignments, Rsamtools, bsseq, rtracklayer. |
brainflowprobes | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, bumphunter, derfinder, derfinderPlot, ensembldb, ggbio, rtracklayer. |
branchpointer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
breakpointR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
BRGenomics | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
BSgenomeForge | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
BubbleTree | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
BUSpaRse | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, plyranges, rtracklayer. |
CAFE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
CAGEfightR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
cageminer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
CAGEr | Unclaimed | Incomplete Bioc dependencies: BSgenome, CAGEfightR, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
cardelino | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
casper | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
categoryCompare | Unclaimed | Incomplete Bioc dependencies: RCy3. |
cbaf | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, RTCGAToolbox, Rsamtools, TCGAutils, cBioPortalData, rtracklayer. |
CBEA | Unclaimed | Incomplete Bioc dependencies: TreeSummarizedExperiment. |
cBioPortalData | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, RTCGAToolbox, Rsamtools, TCGAutils, rtracklayer. |
CBNplot | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
celda | Unclaimed | |
CellBarcode | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
cellbaseR | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
CEMiTool | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
censcyt | Unclaimed | Incomplete Bioc dependencies: diffcyt. |
CeTF | Unclaimed | Incomplete Bioc dependencies: DOSE, RCy3, clusterProfiler, enrichplot. |
CexoR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, genomation, rtracklayer, seqPattern. |
cfDNAPro | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, plyranges, rtracklayer. |
ChAMP | Unclaimed | Incomplete Bioc dependencies: BSgenome, DMRcate, DSS, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, bsseq, bumphunter, ensembldb, goseq, lumi, methylumi, minfi, missMethyl, rtracklayer, wateRmelon. |
ChIC | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
chimeraviz | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
ChIPanalyser | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
ChIPComp | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
chipenrich | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
ChIPexoQual | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
ChIPpeakAnno | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, regioneR, rtracklayer. |
ChIPQC | Unclaimed | Incomplete Bioc dependencies: BSgenome, DiffBind, GenomicAlignments, GenomicFeatures, GreyListChIP, Rsamtools, ShortRead, chipseq, rtracklayer, systemPipeR. |
ChIPseeker | Unclaimed | Incomplete Bioc dependencies: DOSE, GenomicAlignments, GenomicFeatures, Rsamtools, enrichplot, rtracklayer. |
chipseq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
ChIPseqR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
ChIPsim | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
ChIPXpress | Unclaimed | Incomplete Bioc dependencies: frma, oligo, oligoClasses. |
ChromHeatMap | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
chromPlot | Unclaimed | |
ChromSCape | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
chromstaR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
chromswitch | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
chromVAR | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, rtracklayer. |
cicero | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
circRNAprofiler | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, gwascat, rtracklayer. |
CircSeqAlignTk | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rbowtie2, Rhisat2, Rsamtools, SGSeq, ShortRead, rtracklayer. |
ClassifyR | Unclaimed | |
cleanUpdTSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
cliProfiler | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
clusterExperiment | Unclaimed | Incomplete Bioc dependencies: zinbwave. |
clusterProfiler | Unclaimed | Incomplete Bioc dependencies: DOSE, enrichplot. |
cn.farms | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
CNVfilteR | Unclaimed | Incomplete Bioc dependencies: BSgenome, CopyNumberPlots, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, cn.mops, ensembldb, exomeCopy, karyoploteR, regioneR, rtracklayer. |
CNViz | Unclaimed | Incomplete Bioc dependencies: BSgenome, CopyNumberPlots, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, cn.mops, ensembldb, exomeCopy, karyoploteR, regioneR, rtracklayer. |
CNVPanelizer | Unclaimed | Incomplete Bioc dependencies: Rsamtools, exomeCopy. |
CNVRanger | Unclaimed | Incomplete Bioc dependencies: GDSArray. |
CNVrd2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
COCOA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, MIRA, Rsamtools, bsseq, rtracklayer. |
CODEX | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
CoGAPS | Unclaimed | |
Cogito | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
comapr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
coMET | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
coMethDMR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, rtracklayer. |
compartmap | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
compEpiTools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, methylPipe, rtracklayer. |
condiments | Unclaimed | Incomplete Bioc dependencies: distinct. |
consensusDE | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicAlignments, GenomicFeatures, RUVSeq, Rsamtools, ShortRead, ensembldb, rtracklayer. |
consensusOV | Unclaimed | Incomplete Bioc dependencies: GSVA. |
consensusSeekeR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
consICA | Unclaimed | |
contiBAIT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, exomeCopy, rtracklayer. |
conumee | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
CopyNumberPlots | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, cn.mops, ensembldb, exomeCopy, karyoploteR, regioneR, rtracklayer. |
cosmiq | Unclaimed | |
countsimQC | Unclaimed | |
CoverageView | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
cpvSNP | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
crisprBowtie | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
crisprBwa | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
crisprDesign | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, crisprBowtie, rtracklayer. |
CRISPRseek | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
crisprseekplus | Unclaimed | Incomplete Bioc dependencies: BSgenome, CRISPRseek, ChIPpeakAnno, GUIDEseq, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, regioneR, rtracklayer. |
CrispRVariants | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
crisprVerse | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, crisprBowtie, crisprDesign, crisprViz, ensembldb, rtracklayer. |
crisprViz | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, crisprBowtie, crisprDesign, ensembldb, rtracklayer. |
crlmm | Unclaimed | Incomplete Bioc dependencies: oligoClasses. |
csaw | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
CSSQ | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
cummeRbund | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
customProDB | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
cyanoFilter | Unclaimed | Incomplete Bioc dependencies: flowDensity. |
CyTOFpower | Unclaimed | Incomplete Bioc dependencies: diffcyt. |
dada2 | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
dagLogo | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, motifStack, rtracklayer. |
DAMEfinder | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, bumphunter, rtracklayer. |
DaMiRseq | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, rtracklayer. |
dasper | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, plyranges, rtracklayer. |
ddPCRclust | Unclaimed | Incomplete Bioc dependencies: flowDensity. |
debrowser | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
decompTumor2Sig | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
deconvR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, methylKit, minfi, rtracklayer. |
DeepBlueR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
deepSNV | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
DegNorm | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
DEGraph | Unclaimed | Incomplete Bioc dependencies: NCIgraph, RCy3. |
DeMixT | Unclaimed | Incomplete Bioc dependencies: BSgenome, DSS, GenomicAlignments, Rsamtools, bsseq, rtracklayer. |
derfinderPlot | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, bumphunter, derfinder, ensembldb, ggbio, rtracklayer. |
DEScan2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPpeakAnno, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, regioneR, rtracklayer. |
DiffBind | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GreyListChIP, Rsamtools, ShortRead, rtracklayer, systemPipeR. |
diffcyt | Unclaimed | |
diffHic | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, csaw, rtracklayer. |
diffUTR | Unclaimed | Incomplete Bioc dependencies: DEXSeq, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
DMCFB | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
DMCHMM | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
DMRcate | Unclaimed | Incomplete Bioc dependencies: BSgenome, DSS, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, bsseq, bumphunter, ensembldb, methylumi, minfi, missMethyl, rtracklayer. |
DMRforPairs | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
dmrseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, annotatr, bsseq, bumphunter, regioneR, rtracklayer. |
DNAfusion | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
DominoEffect | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
doppelgangR | Unclaimed | |
doubletrouble | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer, syntenet. |
dpeak | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
drugTargetInteractions | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
DrugVsDisease | Unclaimed | Incomplete Bioc dependencies: ArrayExpress, oligo, oligoClasses. |
EasyCellType | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
easyRNASeq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
eegc | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
EGSEA | Unclaimed | Incomplete Bioc dependencies: GSVA. |
ELMER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, TCGAbiolinks, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
enhancerHomologSearch | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, motifmatchr, rtracklayer. |
ENmix | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
EnrichmentBrowser | Unclaimed | |
enrichplot | Unclaimed | Incomplete Bioc dependencies: DOSE. |
enrichTF | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, DOSE, GenomicAlignments, Rsamtools, TFBSTools, clusterProfiler, enrichplot, motifmatchr, pipeFrame, rtracklayer. |
ensembldb | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
ensemblVEP | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
epialleleR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
EpiCompare | Unclaimed | Incomplete Bioc dependencies: BRGenomics, BSgenome, ChIPseeker, DOSE, GenomicAlignments, GenomicFeatures, Rsamtools, enrichplot, genomation, rtracklayer, seqPattern. |
epidecodeR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
epigenomix | Unclaimed | Incomplete Bioc dependencies: Rsamtools, beadarray. |
epigraHMM | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GreyListChIP, Rsamtools, csaw, rtracklayer. |
EpiMix | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
epimutacions | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, bumphunter, ensembldb, minfi, rtracklayer. |
EpiTxDb | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
epivizr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, bumphunter, ensembldb, epivizrData, rtracklayer. |
epivizrChart | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, ensembldb, epivizrData, rtracklayer. |
epivizrData | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, ensembldb, rtracklayer. |
epivizrStandalone | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, bumphunter, ensembldb, epivizr, epivizrData, rtracklayer. |
erma | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, OrganismDbi, Rsamtools, VariantAnnotation, rtracklayer. |
esATAC | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, ChIPseeker, DOSE, GenomicAlignments, GenomicFeatures, Rbowtie2, Rsamtools, ShortRead, TFBSTools, clusterProfiler, enrichplot, motifmatchr, pipeFrame, rtracklayer. |
escheR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
eudysbiome | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
EventPointer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, SGSeq, rtracklayer. |
EWCE | Unclaimed | |
ExCluster | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
exomePeak2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
ExperimentSubset | Unclaimed | Incomplete Bioc dependencies: TreeSummarizedExperiment. |
extraChIPs | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicInteractions, Gviz, Rsamtools, VariantAnnotation, biovizBase, csaw, ensembldb, rtracklayer. |
factR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer, wiggleplotr. |
famat | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
FastqCleaner | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
fCCAC | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, genomation, rtracklayer, seqPattern. |
fcoex | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
fcScan | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
fedup | Unclaimed | Incomplete Bioc dependencies: RCy3. |
ffpe | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer. |
FilterFFPE | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
FindIT2 | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
FLAMES | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, bambu, biovizBase, ensembldb, ggbio, rtracklayer. |
flowCut | Unclaimed | Incomplete Bioc dependencies: flowDensity. |
FRASER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OUTRIDER, Rsamtools, rtracklayer. |
FunChIP | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
funtooNorm | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
GA4GHclient | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
GA4GHshiny | Unclaimed | Incomplete Bioc dependencies: BSgenome, GA4GHclient, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
GARS | Unclaimed | Incomplete Bioc dependencies: DaMiRseq, EDASeq, GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, rtracklayer. |
gcapc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
GDCRNATools | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
GDSArray | Unclaimed | |
genbankr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
geneAttribution | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
GeneBreak | Unclaimed | Incomplete Bioc dependencies: QDNAseq, Rsamtools. |
GeneGeneInteR | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
GENESIS | Unclaimed | Incomplete Bioc dependencies: SeqVarTools. |
GeneStructureTools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
GeneTonic | Unclaimed | |
geneXtendeR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
genomation | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer, seqPattern. |
GenomicAlignments | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
GenomicFeatures | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
GenomicInteractionNodes | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
GenomicOZone | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
GenomicScores | Unclaimed | |
GenVisR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
GeoTcgaData | Unclaimed | |
gespeR | Unclaimed | Incomplete Bioc dependencies: cellHTS2. |
ggmanh | Unclaimed | |
girafe | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
glmSparseNet | Unclaimed | |
gmapR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
gmoviz | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
GOfuncR | Unclaimed | |
goseq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
goSorensen | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
GOTHiC | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, ShortRead, rtracklayer. |
GRaNIE | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
GreyListChIP | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
groHMM | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
GSEABenchmarkeR | Unclaimed | Incomplete Bioc dependencies: EnrichmentBrowser. |
gsean | Unclaimed | Incomplete Bioc dependencies: PPInfer. |
GSReg | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, rtracklayer. |
GSVA | Unclaimed | |
GUIDEseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, CRISPRseek, ChIPpeakAnno, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, regioneR, rtracklayer. |
Guitar | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
gwasurvivr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
GWENA | Unclaimed | |
h5vc | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
HelloRanges | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
hermes | Unclaimed | |
hiAnnotator | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
HiCDCPlus | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicInteractions, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
HiLDA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
hipathia | Unclaimed | |
hiReadsProcessor | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, hiAnnotator, rtracklayer. |
HiTC | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
HTSeqGenie | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, VariantAnnotation, VariantTools, chipseq, gmapR, rtracklayer. |
icetea | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, VariantAnnotation, csaw, rtracklayer. |
iCheck | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer. |
iCNV | Unclaimed | Incomplete Bioc dependencies: BSgenome, CODEX, GenomicAlignments, Rsamtools, rtracklayer. |
ideal | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, goseq, rtracklayer. |
IdeoViz | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
igvR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
IMAS | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, IVAS, Rsamtools, rtracklayer. |
InPAS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, cleanUpdTSeq, plyranges, rtracklayer. |
INSPEcT | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
InTAD | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
intansv | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
IntEREst | Unclaimed | Incomplete Bioc dependencies: BSgenome, DEXSeq, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, rtracklayer. |
IONiseR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
ipdDb | Unclaimed | |
IPO | Unclaimed | |
IRISFGM | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
iSEEhub | Unclaimed | |
IsoformSwitchAnalyzeR | Unclaimed | Incomplete Bioc dependencies: BSgenome, DEXSeq, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer, tximeta. |
ITALICS | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
IVAS | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
katdetectr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, plyranges, rtracklayer. |
kissDE | Unclaimed | Incomplete Bioc dependencies: BSgenome, DSS, GenomicAlignments, Rsamtools, bsseq, rtracklayer. |
LACE | Unclaimed | |
lineagespot | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
m6Aboost | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
MADSEQ | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
MAGAR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, RnBeads, Rsamtools, bumphunter, crlmm, methylumi, minfi, oligoClasses, rtracklayer. |
MAGeCKFlute | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
magpie | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, TRESS, rtracklayer. |
MAIT | Unclaimed | |
mariner | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, plotgardener, plyranges, rtracklayer. |
maser | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
mastR | Unclaimed | |
MatrixQCvis | Unclaimed | |
MatrixRider | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, rtracklayer. |
mBPCR | Unclaimed | Incomplete Bioc dependencies: oligoClasses. |
mCSEA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
MDTS | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
MEAL | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, MultiDataSet, Rsamtools, VariantAnnotation, biovizBase, bumphunter, ensembldb, methylumi, minfi, missMethyl, rtracklayer. |
MEAT | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer, wateRmelon. |
MEDIPS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
meshes | Unclaimed | Incomplete Bioc dependencies: DOSE, enrichplot. |
Metab | Unclaimed | |
MetaboAnnotation | Unclaimed | |
MetaboSignal | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, MWASTools, Rsamtools, ensembldb, mygene, rtracklayer. |
metagene | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
metagene2 | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
metaMS | Unclaimed | |
MetaPhOR | Unclaimed | Incomplete Bioc dependencies: DOSE, RCy3, clusterProfiler, enrichplot. |
methInheritSim | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, methylKit, rtracklayer. |
MethReg | Unclaimed | Incomplete Bioc dependencies: sesame. |
methrix | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
MethylAid | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
methylCC | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, bsseq, bumphunter, minfi, plyranges, rtracklayer. |
methylclock | Unclaimed | Incomplete Bioc dependencies: AnnotationHubData, ExperimentHubData, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, bumphunter, minfi, rtracklayer. |
methylGSA | Unclaimed | Incomplete Bioc dependencies: DOSE, GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, clusterProfiler, enrichplot, methylumi, minfi, missMethyl, rtracklayer. |
methylInheritance | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, methylKit, rtracklayer. |
methylKit | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
methylPipe | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
MethylSeekR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
methylSig | Unclaimed | Incomplete Bioc dependencies: BSgenome, DSS, GenomicAlignments, Rsamtools, bsseq, rtracklayer. |
miaSim | Unclaimed | Incomplete Bioc dependencies: TreeSummarizedExperiment. |
miaViz | Unclaimed | Incomplete Bioc dependencies: TreeSummarizedExperiment, mia. |
microbiomeMarker | Unclaimed | Incomplete Bioc dependencies: ANCOMBC, TreeSummarizedExperiment, mia. |
MicrobiomeProfiler | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
microSTASIS | Unclaimed | Incomplete Bioc dependencies: TreeSummarizedExperiment. |
mimager | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
MineICA | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer. |
MinimumDistance | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, VanillaICE, crlmm, oligoClasses, rtracklayer. |
MIRA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, bsseq, rtracklayer. |
miRLAB | Unclaimed | Incomplete Bioc dependencies: TCGAbiolinks. |
miRSM | Unclaimed | Incomplete Bioc dependencies: DOSE, ReactomePA, clusterProfiler, enrichplot, miRspongeR. |
miRspongeR | Unclaimed | Incomplete Bioc dependencies: DOSE, ReactomePA, clusterProfiler, enrichplot. |
missMethyl | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, methylumi, minfi, rtracklayer. |
mitoClone2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, deepSNV, rtracklayer. |
MLInterfaces | Unclaimed | |
MMAPPR2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, VariantTools, ensemblVEP, gmapR, rtracklayer. |
MMDiff2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
moanin | Unclaimed | |
MOGAMUN | Unclaimed | Incomplete Bioc dependencies: RCy3. |
monaLisa | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, rtracklayer. |
MoonlightR | Unclaimed | Incomplete Bioc dependencies: DOSE, TCGAbiolinks, clusterProfiler, enrichplot. |
mosaics | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
Motif2Site | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
motifbreakR | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, GenomicFeatures, Gviz, MotifDb, Rsamtools, TFBSTools, VariantAnnotation, biovizBase, ensembldb, motifStack, rtracklayer. |
motifmatchr | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, rtracklayer. |
MouseFM | Unclaimed | |
msgbsR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, ShortRead, VariantAnnotation, biovizBase, easyRNASeq, ensembldb, ggbio, rtracklayer. |
MSnID | Unclaimed | |
MSPrep | Unclaimed | |
MsQuality | Unclaimed | Incomplete Bioc dependencies: MsExperiment. |
MultiBaC | Unclaimed | Incomplete Bioc dependencies: MultiDataSet, ropls. |
multicrispr | Unclaimed | Incomplete Bioc dependencies: BSgenome, CRISPRseek, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, ensembldb, karyoploteR, plyranges, regioneR, rtracklayer. |
multiSight | Unclaimed | Incomplete Bioc dependencies: DOSE, MultiDataSet, ReactomePA, biosigner, clusterProfiler, enrichplot, ropls. |
MungeSumstats | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
muscat | Unclaimed | |
musicatk | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, decompTumor2Sig, rtracklayer. |
mygene | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
myvariant | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
NADfinder | Unclaimed | Incomplete Bioc dependencies: ATACseqQC, BSgenome, CNEr, ChIPpeakAnno, GenomicAlignments, GenomicFeatures, GenomicScores, Gviz, Rsamtools, TFBSTools, VariantAnnotation, biovizBase, csaw, ensembldb, motifStack, regioneR, rtracklayer, trackViewer. |
NanoMethViz | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, bsseq, rtracklayer. |
NBAMSeq | Unclaimed | |
ncGTW | Unclaimed | |
NCIgraph | Unclaimed | Incomplete Bioc dependencies: RCy3. |
nearBynding | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, plyranges, rtracklayer. |
netOmics | Unclaimed | Incomplete Bioc dependencies: RandomWalkRestartMH. |
netSmooth | Unclaimed | Incomplete Bioc dependencies: clusterExperiment, zinbwave. |
netZooR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, RCy3, Rsamtools, bumphunter, minfi, quantro, rtracklayer, yarn. |
NoRCE | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
normr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
nucleR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
nullranges | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, plyranges, rtracklayer. |
NxtIRFcore | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
octad | Unclaimed | Incomplete Bioc dependencies: EDASeq, GSVA, GenomicAlignments, GenomicFeatures, RUVSeq, Rsamtools, ShortRead, rtracklayer. |
ODER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, bumphunter, dasper, derfinder, plyranges, rtracklayer. |
OGRE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
oligoClasses | Unclaimed | |
OmaDB | Unclaimed | |
omicRexposome | Unclaimed | Incomplete Bioc dependencies: MultiDataSet. |
OMICsPCA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, HelloRanges, Rsamtools, VariantAnnotation, rtracklayer. |
openPrimeRui | Unclaimed | Incomplete Bioc dependencies: openPrimeR. |
oppar | Unclaimed | Incomplete Bioc dependencies: GSVA. |
ORFhunteR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
ORFik | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
Organism.dplyr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
OTUbase | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
OUTRIDER | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
OutSplice | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Repitools, Rsamtools, rtracklayer. |
pageRank | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, Rsamtools, TFBSTools, motifmatchr, rtracklayer. |
pairedGSEA | Unclaimed | Incomplete Bioc dependencies: DEXSeq, Rsamtools. |
panelcn.mops | Unclaimed | Incomplete Bioc dependencies: Rsamtools, cn.mops, exomeCopy. |
PanomiR | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
pareg | Unclaimed | Incomplete Bioc dependencies: DOSE. |
PAST | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
PathoStat | Unclaimed | |
PDATK | Unclaimed | |
pdInfoBuilder | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
periodicDNA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
PFP | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
phantasus | Unclaimed | |
phenomis | Unclaimed | Incomplete Bioc dependencies: MultiDataSet, ropls. |
PhyloProfile | Unclaimed | Incomplete Bioc dependencies: OmaDB. |
PICS | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
Pigengene | Unclaimed | Incomplete Bioc dependencies: DOSE, ReactomePA, clusterProfiler, enrichplot. |
PING | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, PICS, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
pipeFrame | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
plotgardener | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, plyranges, rtracklayer. |
plyranges | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
podkat | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
pogos | Unclaimed | |
POMA | Unclaimed | |
PPInfer | Unclaimed | |
pram | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
prebs | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
preciseTAD | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rCGH, rtracklayer. |
primirTSS | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, GenomicFeatures, GenomicScores, Gviz, Rsamtools, TFBSTools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
proActiv | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
proBAMr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
profileplyr | Unclaimed | Incomplete Bioc dependencies: ChIPseeker, DOSE, GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, chipseq, enrichplot, rGREAT, rtracklayer, soGGi. |
projectR | Unclaimed | Incomplete Bioc dependencies: CoGAPS. |
pRolocGUI | Unclaimed | Incomplete Bioc dependencies: MLInterfaces, pRoloc. |
proteasy | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
ProteoDisco | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
psichomics | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, bumphunter, derfinder, recount, rtracklayer. |
PureCN | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
pwOmics | Unclaimed | |
QDNAseq | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
qsea | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
qsvaR | Unclaimed | |
R3CPET | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
r3Cseq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
R453Plus1Toolbox | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, VariantAnnotation, rtracklayer. |
ramwas | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
RareVariantVis | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicScores, Rsamtools, VariantAnnotation, rtracklayer. |
Rbec | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead, dada2. |
Rbowtie2 | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
RCAS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, genomation, rtracklayer, seqPattern. |
rCGH | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
RcisTarget | Unclaimed | |
ReactomePA | Unclaimed | Incomplete Bioc dependencies: DOSE, enrichplot. |
recount | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, bumphunter, derfinder, rtracklayer. |
recount3 | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
recountmethylation | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
recoup | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
REDseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPpeakAnno, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, regioneR, rtracklayer. |
RegEnrich | Unclaimed | Incomplete Bioc dependencies: DOSE. |
regioneReloaded | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, regioneR, rtracklayer. |
regionReport | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, bumphunter, derfinder, rtracklayer. |
regutools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, RCy3, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
REMP | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
Repitools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
RepViz | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
ReQON | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
RESOLVE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, MutationalPatterns, Rsamtools, VariantAnnotation, rtracklayer. |
restfulSE | Unclaimed | |
rfPred | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
rGADEM | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
RGMQL | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
RgnTX | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, regioneR, rtracklayer. |
rgsepd | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, goseq, rtracklayer. |
RiboCrypt | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, ORFik, Rsamtools, rtracklayer. |
RiboDiPA | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
RiboProfiling | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
ribosomeProfilingQC | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, EDASeq, GenomicAlignments, GenomicFeatures, RUVSeq, Rsamtools, ShortRead, TFBSTools, motifStack, rtracklayer. |
rifi | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
rifiComparative | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
RIPAT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, biovizBase, ensembldb, karyoploteR, regioneR, rtracklayer. |
RITAN | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
RJMCMCNucleosomes | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, consensusSeekeR, rtracklayer. |
RLSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, regioneR, rtracklayer. |
Rmmquant | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
rmspc | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
RNAAgeCalc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, bumphunter, derfinder, recount, rtracklayer. |
rnaEditr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, rtracklayer. |
RNAmodR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
RNAmodR.AlkAnilineSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, RNAmodR, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
RNAmodR.ML | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, RNAmodR, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
RNAmodR.RiboMethSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, RNAmodR, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
RnaSeqSampleSize | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, bumphunter, derfinder, recount, rtracklayer. |
RnBeads | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, methylumi, minfi, rtracklayer. |
roar | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
Rqc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, ShortRead, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
rqt | Unclaimed | Incomplete Bioc dependencies: MultiDataSet, ropls. |
rrvgo | Unclaimed | |
Rsamtools | Unclaimed | |
RSVSim | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead. |
RTCGAToolbox | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, TCGAutils, rtracklayer. |
rtracklayer | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
rTRMui | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, MotifDb, Rsamtools, rtracklayer. |
SCAN.UPC | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
scanMiRApp | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
scAnnotatR | Unclaimed | |
SCANVIS | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
SCATE | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
scBFA | Unclaimed | Incomplete Bioc dependencies: zinbwave. |
scClassify | Unclaimed | |
scDblFinder | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
scFeatures | Unclaimed | Incomplete Bioc dependencies: GSVA, GenomicAlignments, GenomicFeatures, Rsamtools, ensembldb, rtracklayer. |
scmeth | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, annotatr, bsseq, regioneR, rtracklayer. |
scone | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicAlignments, GenomicFeatures, RUVSeq, Rsamtools, ShortRead, rtracklayer. |
SCOPE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
scoreInvHap | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
scp | Unclaimed | |
scPipe | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
scRNAseqApp | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
scruff | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, ShortRead, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
scTensor | Unclaimed | Incomplete Bioc dependencies: DOSE, ReactomePA, enrichplot. |
scTGIF | Unclaimed | |
scTreeViz | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, bumphunter, ensembldb, epivizr, epivizrData, rtracklayer. |
segmenter | Unclaimed | Incomplete Bioc dependencies: ChIPseeker, DOSE, GenomicAlignments, GenomicFeatures, Rsamtools, enrichplot, rtracklayer. |
selectKSigs | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, HiLDA, Rsamtools, rtracklayer. |
seq2pathway | Unclaimed | |
seqArchRplus | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPseeker, DOSE, GenomicAlignments, GenomicFeatures, Rsamtools, clusterProfiler, enrichplot, heatmaps, rtracklayer, seqPattern. |
seqCAT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
SeqGSEA | Unclaimed | |
seqPattern | Unclaimed | |
seqsetvis | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
SeqSQC | Unclaimed | |
sesame | Unclaimed | |
SEtools | Unclaimed | |
sevenC | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
SGCP | Unclaimed | |
shinyepico | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
shinyMethyl | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, rtracklayer. |
ShortRead | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
SICtools | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
SigCheck | Unclaimed | Incomplete Bioc dependencies: MLInterfaces. |
signatureSearch | Unclaimed | Incomplete Bioc dependencies: DOSE, clusterProfiler, enrichplot. |
signeR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
signifinder | Unclaimed | Incomplete Bioc dependencies: GSVA, GenomicAlignments, GenomicFeatures, Rsamtools, consensusOV, ensembldb, rtracklayer. |
SigsPack | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
SimBu | Unclaimed | |
SimFFPE | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
single | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
singleCellTK | Unclaimed | Incomplete Bioc dependencies: GSVA, GenomicAlignments, GenomicFeatures, Rsamtools, celda, ensembldb, rtracklayer, scDblFinder, zinbwave. |
SingleMoleculeFootprinting | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, QuasR, Rsamtools, ShortRead, VariantAnnotation, rtracklayer. |
singscore | Unclaimed | |
SISPA | Unclaimed | Incomplete Bioc dependencies: GSVA. |
sitadela | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
skewr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer, wateRmelon. |
SMITE | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, goseq, rtracklayer. |
SNPhood | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
soGGi | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ShortRead, chipseq, rtracklayer. |
SomaticSignatures | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
sparrow | Unclaimed | |
SparseSignatures | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
spatialHeatmap | Unclaimed | |
spatzie | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicAlignments, GenomicFeatures, GenomicInteractions, Gviz, Rsamtools, TFBSTools, VariantAnnotation, biovizBase, ensembldb, motifmatchr, rtracklayer. |
spiky | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
SpliceWiz | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
SplicingGraphs | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
SPLINTER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
SPsimSeq | Unclaimed | |
sSNAPPY | Unclaimed | |
ssviz | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
standR | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicAlignments, GenomicFeatures, RUVSeq, Rsamtools, ShortRead, rtracklayer. |
staRank | Unclaimed | Incomplete Bioc dependencies: cellHTS2. |
strandCheckR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
StructuralVariantAnnotation | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
supersigs | Unclaimed | |
svaNUMT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, StructuralVariantAnnotation, VariantAnnotation, rtracklayer. |
svaRetro | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, StructuralVariantAnnotation, VariantAnnotation, rtracklayer. |
SVMDO | Unclaimed | Incomplete Bioc dependencies: DOSE. |
syntenet | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
TAPseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
TBSignatureProfiler | Unclaimed | Incomplete Bioc dependencies: GSVA, singscore. |
TCGAbiolinks | Unclaimed | |
TCseq | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
TDbasedUFEadv | Unclaimed | Incomplete Bioc dependencies: DOSE, enrichplot. |
TEKRABber | Unclaimed | |
tenXplore | Unclaimed | Incomplete Bioc dependencies: restfulSE. |
TEQC | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
terraTCGAdata | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, TCGAutils, rtracklayer. |
TFEA.ChIP | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
TFHAZ | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, ORFik, Rsamtools, rtracklayer. |
TFutils | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
tidybulk | Unclaimed | |
TimiRGeN | Unclaimed | Incomplete Bioc dependencies: DOSE, RCy3, clusterProfiler, enrichplot. |
TissueEnrich | Unclaimed | |
TitanCNA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
tLOH | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
TNBC.CMS | Unclaimed | Incomplete Bioc dependencies: GSVA. |
TOP | Unclaimed | Incomplete Bioc dependencies: ClassifyR. |
tracktables | Unclaimed | Incomplete Bioc dependencies: Rsamtools. |
trackViewer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
transcriptR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, ShortRead, chipseq, rtracklayer. |
tRanslatome | Unclaimed | |
transomics2cytoscape | Unclaimed | Incomplete Bioc dependencies: RCy3. |
traseR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
treekoR | Unclaimed | Incomplete Bioc dependencies: diffcyt. |
TreeSummarizedExperiment | Unclaimed | |
trena | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, MotifDb, Rsamtools, rtracklayer. |
TRESS | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
TVTB | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensemblVEP, ensembldb, rtracklayer. |
txcutr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
Ularcirc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Organism.dplyr, Rsamtools, plotgardener, plyranges, rtracklayer. |
UMI4Cats | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rbowtie2, Rsamtools, ShortRead, regioneR, rtracklayer. |
uncoverappLib | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Gviz, OrganismDbi, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
Uniquorn | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
VanillaICE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, crlmm, oligoClasses, rtracklayer. |
VarCon | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
VariantExperiment | Unclaimed | Incomplete Bioc dependencies: GDSArray. |
VariantFiltering | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicScores, Gviz, Rsamtools, VariantAnnotation, biovizBase, ensembldb, rtracklayer. |
VariantTools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |
VaSP | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, ballgown, rtracklayer. |
VCFArray | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, GenomicFiles, Rsamtools, VariantAnnotation, rtracklayer. |
VplotR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools. |
vtpnet | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, gwascat, rtracklayer. |
vulcan | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPpeakAnno, DiffBind, GenomicAlignments, GenomicFeatures, GreyListChIP, Rsamtools, ShortRead, csaw, ensembldb, regioneR, rtracklayer, systemPipeR. |
wateRmelon | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, lumi, methylumi, minfi, rtracklayer. |
wavClusteR | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, rtracklayer. |
wiggleplotr | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, Rsamtools, rtracklayer. |
XNAString | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, Rsamtools, rtracklayer. |
YAPSA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, OrganismDbi, Rsamtools, SomaticSignatures, VariantAnnotation, biovizBase, ensembldb, ggbio, rtracklayer. |
yarn | Unclaimed | Incomplete Bioc dependencies: GenomicAlignments, GenomicFeatures, Rsamtools, bumphunter, minfi, quantro, rtracklayer. |
zinbwave | Unclaimed | |
ZygosityPredictor | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicAlignments, GenomicFeatures, Rsamtools, VariantAnnotation, rtracklayer. |