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Fix error with multiline formatted warnings #44

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merged 2 commits into from
Oct 10, 2024
Merged

Fix error with multiline formatted warnings #44

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bd554c6
remove error with multiline formatted warnings
jkanche Oct 10, 2024
c297100
update changelog
jkanche Oct 10, 2024
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4 changes: 2 additions & 2 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# Changelog

## Version 0.2.4
## Version 0.2.4 - 0.2.5

- Provide options to consistently extract cell metadata columns across datasets.
- Provide options to extract an expected set of cell metadata columns across datasets.
- Update documentation and tests.

## Version 0.2.1 - 0.2.3
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11 changes: 2 additions & 9 deletions src/cellarr/build_cellarrdataset.py
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Expand Up @@ -220,10 +220,7 @@ def build_cellarrdataset(
####
if gene_annotation is None:
warnings.warn(
(
"Scanning all files for feature ids (e.g. gene symbols) and cell annotations, this may take long, ",
"Please also make sure you have enough memory.",
),
"Scanning all files for feature ids (e.g. gene symbols) and cell annotations, this may take long, Please also make sure you have enough memory.",
UserWarning,
)

Expand Down Expand Up @@ -384,11 +381,7 @@ def build_cellarrdataset(
)

warnings.warn(
(
"'cell_metadata' csv file is expected to contain mapping between cells and samples",
"especially 'cellarr_sample' (which sample the cell comes from) and ",
"'cellarr_cell_index_in_sample' (index of the cell within the sample) columns.",
),
"'cell_metadata' csv file is expected to contain mapping between cells and samples especially 'cellarr_sample' (which sample the cell comes from) and 'cellarr_cell_index_in_sample' (index of the cell within the sample) columns.",
UserWarning,
)
elif isinstance(cell_metadata, pd.DataFrame):
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