Precompute ExactSearchQuery faster #190
Workflow file for this run
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| name: Downstream | |
| on: | |
| push: | |
| branches: [master] | |
| tags: [v*] | |
| pull_request: | |
| jobs: | |
| test: | |
| name: ${{ matrix.package.repo }}/${{ matrix.package.group }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| GROUP: ${{ matrix.package.group }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| julia-version: [1] | |
| os: [ubuntu-latest] | |
| package: | |
| - {user: bioinfologics, repo: Pseudoseq.jl, group: BioSequences} | |
| - {user: BioJulia, repo: BioAlignments.jl, group: BioSequences} | |
| - {user: BioJulia, repo: BioStructures.jl, group: BioSequences} | |
| - {user: BioJulia, repo: FASTX.jl, group: BioSequences} | |
| - {user: BioJulia, repo: GenomeGraphs.jl, group: BioSequences} | |
| - {user: BioJulia, repo: GenomicAnnotations.jl, group: BioSequences} | |
| - {user: BioJulia, repo: GFF3.jl, group: BioSequences} | |
| - {user: BioJulia, repo: KmerAnalysis.jl, group: BioSequences} | |
| - {user: BioJulia, repo: ReadDatastores.jl, group: BioSequences} | |
| - {user: BioJulia, repo: TwoBit.jl, group: BioSequences} | |
| - {user: BioJulia, repo: XAM.jl, group: BioSequences} | |
| - {user: crsl4, repo: PhyloNetworks.jl, group: BioSequences} | |
| - {user: JuliaHealth, repo: CAOS.jl, group: BioSequences} | |
| - {user: nguyetdang, repo: BioGraph.jl, group: BioSequences} | |
| - {user: vanOosterhoutLab, repo: SpeedDate.jl, group: BioSequences} | |
| - {user: varnerlab, repo: JUGRNModelGenerator.jl, group: BioSequences} | |
| - {user: varnerlab, repo: VLConstraintBasedModelGenerationUtilities.jl, group: BioSequences} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| arch: x64 | |
| - uses: julia-actions/julia-buildpkg@latest | |
| - name: Clone Downstream | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: ${{ matrix.package.user }}/${{ matrix.package.repo }} | |
| path: downstream | |
| - name: Load this and run the downstream tests | |
| shell: julia --color=yes --project=downstream {0} | |
| run: | | |
| using Pkg | |
| try | |
| # force it to use this PR's version of the package | |
| Pkg.develop(PackageSpec(path=".")) # resolver may fail with main deps | |
| Pkg.update() | |
| Pkg.test() # resolver may fail with test time deps | |
| catch err | |
| err isa Pkg.Resolve.ResolverError || rethrow() | |
| # If we can't resolve that means this is incompatible by SemVer and this is fine. | |
| # It means we marked this as a breaking change, so we don't need to worry about. | |
| # Mistakenly introducing a breaking change, as we have intentionally made one. | |
| @info "Not compatible with this release. No problem." exception=err | |
| exit(0) # Exit immediately, as a success | |
| end |