StarlingDecompMicrobiome

Code files

Starling2022.r contains code use in creating figures for technical report

Starling2019.r contains code used for inline statistics and figures

Starling7.31.19.rmd (and Starling7.31.19.html) contains precomputed code used for an overview of the data

StarlingScratch.r contains miscellaneous code

Data files

Taxonomic bacterial communities table-with-taxonomy500.biom (rarefied to 500 reads) table-with-taxonomyNoR.biom (not rarefied) Phylogenetic tree StarlingTree7.31.19.nwk

Predicted functional communities OTU matrix StarlingPiCrustMatrixL2.txt

Group names StarlingPiCrustGroupsL2.csv

metadata StarlingMeta1.16.18.csv

metadata from 2022 StarlingMeta5.13.22.csv

Output files

Figures are given in the Figures/ folder

Text files show the relative abundance for sample groups based on either PICRUSt or taxonomy (Files with other have groups with low abundances grouped into an single group to facilitate plotting)