Skip to content

Issues: BenLangmead/bowtie2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

163 Open 276 Closed
163 Open 276 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

--al-gz and save problems
#504 opened Feb 28, 2025 by VoidandZero
4
Build Args for SRA Zip File?
#503 opened Feb 25, 2025 by WorksAtAUni
Spin lock in receiving input
#502 opened Feb 25, 2025 by karlestira
Manual typo
#501 opened Jan 21, 2025 by outpaddling
Segmentation fault (core dumped) (ERR): bowtie2-align exited with value 139
#500 opened Jan 4, 2025 by surkiim
Error: "bowtie2-build-s does not exist" on Windows
#497 opened Nov 6, 2024 by ivoseverins
2
Warning: Could not open read file "mRNA.fq" for reading; skipping..
#495 opened Sep 25, 2024 by XRL-1343959526
Could not open read file "mRNA.fq" for reading; skipping.
#494 opened Sep 25, 2024 by XRL-1343959526
1
Error: Encountered internal Bowtie 2 exception (#1)- Error reading _ebwt[] array: no more data
#492 opened Sep 16, 2024 by jefferyUstc
1
Bowtie2-build "Doing ahead-of-time memory usage test" requires >5 times the amount of memory than is used by the subsequent process.
#490 opened Sep 13, 2024 by wiebepo
error message Expected bowtie2 to be in same directory with bowtie2-align
#489 opened Sep 9, 2024 by andypan0214
1
The discordant and mixed reads identification in Bowtie2
#487 opened Aug 20, 2024 by daisyko
1
With different read name, the algnment results seem different
#486 opened Aug 19, 2024 by TomhitsJerry
1
Output BAM/SAM omits VN field in @PG header line
#485 opened Aug 10, 2024 by jtoy7
1
Human assembly with bowtie2
#484 opened Aug 7, 2024 by Christaline-George
1
"@" symbol in directory path results in error connected to Config_heavy.pl
#483 opened Jul 31, 2024 by ZRE-Services
2
LIBNCBI_NGS-NOFOUND
#482 opened Jul 17, 2024 by mdsimguy
1
Wrong Windows architecture binaries.
#480 opened Jul 6, 2024 by teepean
2
Error: reads file does not look like a FASTQ file
#479 opened Jun 3, 2024 by jtamames
1
Alignment performance decreases with higher -p option value
#478 opened May 23, 2024 by LawrenceLiu023
6
Alignment Question
#477 opened May 16, 2024 by esdartez
--dpad --gbar
#475 opened May 8, 2024 by zznx
2
--no-mixed --no-discordant
#474 opened May 6, 2024 by zznx
1
Error, fewer reads in file specified with -1 than in file specified with -2
#472 opened Apr 23, 2024 by abulislam
5
bowtie2-build only generate .3.bt2 and .4.bt2 two files
#471 opened Apr 22, 2024 by cyundi
2
ProTip! Find all open issues with in progress development work with linked:pr.