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BioOntology

uakron.edu/BRIC/E2BMO

Here is an attempt to explain the steps one can take to generate the results we have created:

1- Getting Trade-Offs from BMO MASTER file

Open the GetResults.py in a text editor

Change /Library/WebServer/Documents/E2BMO/CGI-Executables/ with appropriate address of your folder on your computer

Make sure BMO MASTER is in the filename at the beginning of GetResults.py

Open terminal in your computer,

write cd [location of your python code]

then write : python GetResults.py 'speed-accuracy trade-off' Noun

This creates a file named : speed-accuracy trade-off_trade_offs.txt -> rename it to speed-accuracy_trade_offs.txt

Repeat this for all the Trade-offs

2- Getting E2BMO

This step needs to be performed after getting all the txt files from step 2.

Open the GetResults.py in a text editor , change BMO MASTER with BMOSKOS_V3 file

In console write python GetResults.py ‘branch’ Function

This creates 2 files ‘branch_BiologicalText.txt’ and ‘branch_graph.csv’

Repeat this step for all the E2B words

3- Putting it all together - The website

Create a folder data/

Put all the files from step 1 and 2 into this folder

Put data/ folder in E2BMO/ folder

Put E2BMO/ folder on your server

Just use the link to E2BMO on your web browser to access the files.

Important notes: Note: am using JavaScript to access the files. This and google graphics for E2BMO need a server connection.

Note: to run python codes, one need to change folder addresses with appropriate ones.

Note : One needs python 3 coding language installed on their computer

Note: BMOMASTER and BMOSKOS_V3 are both XML_RDF format files exported from BMO in Protoge

Note: BMOSKOS_V3 is the SKOS added words to BMO

content on this site is licensed under a Creative Commons Attribution 4.0 International license.

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