aMLProt-plugin

A plugin that train machine learning models automatically

To install the plugin create a conda environment with the name amlrot Go to the plugin folder AMLPROT-plugin/aMLProt/Include Edit the utils.py in the line 438

    # local
    elif cluster == "local":
        print("Generating local jobs...")
        print("Jobs", jobs)
        jobs = "conda run -n amlprot " + jobs

    # change it to 
    jobs = "absolute_path_to_conda/conda run -n amlprot (environment name) " + jobs

Use python 3.10 then install the packages needed for amlprot by going to https://github.com/etiur/aMLProt.git and installing this package in the plugin environment The pyproject.toml has all the necessary dependencies -> and then you also need 2 additional dependencies (mmseqs and perl-bio-featureio which can only be installed via conda)

If you use the plugin please cite this paper: