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@lacan lacan released this 02 Sep 08:28
· 48 commits to main since this release

As per https://forum.image.sc/t/a-bug-in-cellpose-for-qupath-extension-0-9-4/100641/5

This reverts the touching object handling that was broken in the previous version.

this is the information from the previous version

This new update adresses some issues linked to cellpose failing on large tiles, most likely linked to there being overly small tiles being created in some cases.

This was adressed for now by either ignoring images that are too small (which should be included in the overlap between tiles anyway) and by adding a check in case reading a label image has an error, which initially caused the extension to simply crash.

A new builder parameter setOutputModelName(String outputName) allows you to rename the resulting cellpose model after training.

Since Cellpose 3.0, cellpose models can have arbitrary names, so the extension renames the model to a *.cpm (Cellpose Model) with the timestamp of creation.

Feedback welcome