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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 256 34

  2. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 75 22

  3. compgen2021 compgen2021 Public

    R 74 23

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 49 21

  5. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 48 10

  6. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 47 12

Repositories

Showing 10 of 106 repositories
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 31 7 11 0 Updated Feb 10, 2025
  • anglemania Public

    Improved feature extraction for scRNA-seq dataset integration.

    BIMSBbioinfo/anglemania’s past year of commit activity
    R 0 Artistic-2.0 0 19 0 Updated Feb 10, 2025
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 48 10 2 0 Updated Feb 8, 2025
  • flexynesis_manuscript Public

    All publication material relevant for the manuscript describing the flexynesis software package

    BIMSBbioinfo/flexynesis_manuscript’s past year of commit activity
    R 1 0 0 0 Updated Feb 6, 2025
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 1 1 2 0 Updated Jan 30, 2025
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 0 1 0 0 Updated Jan 13, 2025
  • compgen Public
    BIMSBbioinfo/compgen’s past year of commit activity
    0 1 0 0 Updated Dec 28, 2024
  • pigx_rnaseq Public

    Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

    BIMSBbioinfo/pigx_rnaseq’s past year of commit activity
    Python 21 GPL-3.0 12 23 0 Updated Dec 27, 2024
  • oncotrialLLM Public
    BIMSBbioinfo/oncotrialLLM’s past year of commit activity
    Python 2 0 0 0 Updated Dec 26, 2024
  • ZarrDataFrame Public
    BIMSBbioinfo/ZarrDataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 15, 2024

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