Consistent analysis stage indexes (#44)

* Fix analysis stage indexes * bump version
BCCDC-PHL · Jul 11, 2024 · 44834fc · 44834fc
1 parent 7264c22
commit 44834fc
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diff --git a/fluviewer/__init__.py b/fluviewer/__init__.py
@@ -1 +1 @@
-__version__ = '0.1.11-4'
+__version__ = '0.1.11-5'
diff --git a/fluviewer/fluviewer.py b/fluviewer/fluviewer.py
@@ -82,12 +82,8 @@ def main():
         args.output_name,
     )    
 
-    if args.skip_depth_normalization:
-        analysis_stages = []
-    else:
-        analysis_stages = ['normalize_depth']
-
-    analysis_stages += [
+    analysis_stages = [
+        'normalize_depth',
         'assemble_contigs',
         'blast_contigs',
         'scaffolding',