Replace xdrlib with mda_xdrlib (mdtraj#1911)

* Replace with * Replace xdrlib with mda_xdrlib * add mda-xdr lib to docs requirement file
Augustin-Zidek · Jul 18, 2024 · e0a5676 · e0a5676
1 parent 934b273
commit e0a5676
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Showing 4 changed files with 4 additions and 2 deletions.
diff --git a/devtools/conda-envs/test.yaml b/devtools/conda-envs/test.yaml
@@ -8,6 +8,7 @@ dependencies:
   - numpy
   - zlib
   - pyparsing
+  - mda-xdrlib
   - scipy
   - networkx
   - pandas

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -7,6 +7,7 @@ nbsphinx_link
 msmb_theme
 jupyter
 ipython
+mda-xdrlib
 matplotlib
 pandoc
 jinja2

diff --git a/mdtraj/formats/xtc/trr.pyx b/mdtraj/formats/xtc/trr.pyx
@@ -28,7 +28,7 @@
 
 import os
 import warnings
-import xdrlib
+import mda_xdrlib as xdrlib
 
 import numpy as np
 

diff --git a/mdtraj/formats/xtc/xtc.pyx b/mdtraj/formats/xtc/xtc.pyx
@@ -27,7 +27,7 @@
 ###############################################################################
 import os
 import warnings
-import xdrlib
+import mda_xdrlib as xdrlib
 
 import numpy as np
-Original file line number
+Diff line change
@@ Expand Up / @@ -8,6 +8,7 @@ dependencies: @@
       - numpy
       - zlib
       - pyparsing
+      - mda-xdrlib
       - scipy
       - networkx
       - pandas
@@ Expand Down @@