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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 18 14

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  4. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 4

  6. exa-spim-hardware exa-spim-hardware Public

    5

Repositories

Showing 10 of 219 repositories
  • aind-codeocean-utils Public

    Repository to facilitate interfacing with Code Ocean's index

    AllenNeuralDynamics/aind-codeocean-utils’s past year of commit activity
    Python 0 MIT 0 5 1 Updated Aug 12, 2024
  • Aind.Behavior.ForceForaging Public

    A repository for the aind-force-foraging experiment

    AllenNeuralDynamics/Aind.Behavior.ForceForaging’s past year of commit activity
    C# 0 MIT 0 3 1 Updated Aug 12, 2024
  • aind-mri-utils Public

    Allen Institute for Neural Dynamics MRI utilities

    AllenNeuralDynamics/aind-mri-utils’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Aug 12, 2024
  • segmentation-skeleton-metrics Public

    Evaluates neuron segmentations in terms of statistics related to the number of splits and merges

    AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity
    Python 4 MIT 0 1 0 Updated Aug 11, 2024
  • foraging-behavior-browser Public

    Foraging behavior browser (streamlit)

    AllenNeuralDynamics/foraging-behavior-browser’s past year of commit activity
    Python 1 MIT 2 10 0 Updated Aug 11, 2024
  • harp.device.lickety-split Public

    an ephys-compliant capacitive lick detector

    AllenNeuralDynamics/harp.device.lickety-split’s past year of commit activity
    C++ 0 MIT 0 15 0 Updated Aug 10, 2024
  • aind-registration_evaluation Public

    Evaluating Registration and Stitching

    AllenNeuralDynamics/aind-registration_evaluation’s past year of commit activity
    Jupyter Notebook 1 MIT 1 5 1 Updated Aug 10, 2024
  • neuron-tracing-utils Public
    AllenNeuralDynamics/neuron-tracing-utils’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Aug 9, 2024
  • aind-capsule-ephys-LFP-subsampling Public

    Performs Temporal and Spatial Subsampling of Local Field Potential (LFP). Results have a zarr output per probe

    AllenNeuralDynamics/aind-capsule-ephys-LFP-subsampling’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 9, 2024
  • parallax Public

    GUI control software for the Modular Insertion System (MIS)

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 5 MIT 1 0 3 Updated Aug 9, 2024
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