ASF burst download code cleanup #418
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Ubuntu tests | |
| on: | |
| push: | |
| branches: [ "pygmtsar2" ] | |
| pull_request: | |
| branches: [ "pygmtsar2" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| Imperial_Valley_2015: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| uname -a | |
| # prepare system | |
| sudo apt update | |
| # https://github.com/gmtsar/gmtsar/wiki/GMTSAR-Wiki-Page | |
| sudo apt install -y csh subversion autoconf libtiff5-dev libhdf5-dev wget | |
| sudo apt install -y liblapack-dev | |
| sudo apt install -y gfortran | |
| sudo apt install -y g++ | |
| sudo apt install -y libgmt-dev | |
| # gmt-gshhg-full should be installed automatically (it is required to use GMTSAR landmask) | |
| sudo apt install -y gmt | |
| # add missed package | |
| sudo apt install -y make | |
| # vtk rendering | |
| sudo apt install -y xvfb | |
| - name: Compile GMTSAR | |
| run: | | |
| git config --global advice.detachedHead false | |
| git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR | |
| cd GMTSAR | |
| git checkout e98ebc0f4164939a4780b1534bac186924d7c998 | |
| autoconf | |
| ./configure --with-orbits-dir=/tmp CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make install | |
| - name: Install PyGMTSAR | |
| run: | | |
| # vtk rendering | |
| pip3 install pyvista panel | |
| pip3 install -e ./pygmtsar/ | |
| - name: Run test | |
| working-directory: tests | |
| run: | | |
| export PATH=$PATH:${{ github.workspace }}/GMTSAR/bin | |
| Xvfb :99 -screen 0 800x600x24 > /dev/null 2>&1 & | |
| export DISPLAY=:99 | |
| export XVFB_PID=$! | |
| # remove Google Colab specific commands and add __main__ section | |
| cat imperial_valley_2015.py \ | |
| | sed '/if \x27google\.colab\x27 in sys\.modules:/,/^$/d' \ | |
| | sed 's/^[[:blank:]]*!.*$//' \ | |
| | awk '/username = \x27GoogleColab2023\x27/ {print "if __name__ == \x27__main__\x27:"; indent=1} {if(indent) sub(/^/, " "); print}' \ | |
| > imperial_valley_2015.fixed.py | |
| python3 imperial_valley_2015.fixed.py | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Plots (${{ matrix.os }}, ${{ matrix.python-version }}) | |
| path: tests/*.jpg | |
| if-no-files-found: error |