r-script-container

docker template to run R scripts

Create & populate .env file

See .env.tpl to check the required env variables in .env file

envsubst < .env.tpl > .env

Building the container

docker build --build-arg UID=$(id -u) --build-arg GID=$(id -g) -t adanalise .

Running the container (all UFs)

docker run \
  --env-file .env \
  --user $(id -u):$(id -g) \
  --volume ./output:/app/output \
  --network infodengue-dev_infodengue \
  -i adanalise --disease dengue --epiweek 202452 # --uf RS SC PR

[NOTE] You can ignore the --network flag if the database container's IP is in the DB_URI variable