bug fix: order of flow for imp SNP with imp col #36
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name: rworkflows | |
'on': | |
push: | |
branches: | |
- master | |
- main | |
- RELEASE_** | |
pull_request: | |
branches: | |
- master | |
- main | |
- RELEASE_** | |
jobs: | |
rworkflows: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
container: ${{ matrix.config.cont }} | |
strategy: | |
fail-fast: ${{ false }} | |
matrix: | |
config: | |
- os: ubuntu-latest | |
r: devel | |
bioc: devel | |
cont: bioconductor/bioconductor_docker:devel | |
rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release | |
- os: macOS-latest | |
r: latest | |
bioc: release | |
# - os: windows-latest | |
# r: latest | |
# bioc: release | |
steps: | |
- uses: neurogenomics/rworkflows@master | |
with: | |
run_bioccheck: ${{ true }} | |
run_rcmdcheck: ${{ true }} | |
as_cran: ${{ true }} | |
run_vignettes: ${{ true }} | |
has_testthat: ${{ true }} | |
run_covr: ${{ true }} | |
run_pkgdown: ${{ true }} | |
has_runit: ${{ false }} | |
has_latex: ${{ false }} | |
GITHUB_TOKEN: ${{ secrets.PAT_GITHUB }} | |
run_docker: ${{ true }} | |
docker_user: almurphy | |
docker_org: neurogenomicslab | |
DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} | |
runner_os: ${{ runner.os }} | |
timeout: ${{ 2000 }} | |
cache_version: cache-v1 |