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  1. KGD KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    R 21 16

  2. GUS-LD GUS-LD Public

    Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

    R 4 2

  3. snpGBS snpGBS Public

    A simple bioinformatics workflow to identify single nucleotide polymorphism (SNP) from Genotyping-by-Sequencing (GBS) data.

    Jupyter Notebook 2 3

  4. data_prism data_prism Public

    R 1

  5. tardis tardis Public

    tardis

    Python 1

  6. Benchmarks Benchmarks Public

    This repository includes benchmarks that will be used to ensure the fit for purpose and to measure the performance of the Scientific Compute Platform in AgResearch.

    R 1

Repositories

Showing 10 of 50 repositories
  • gbs_prism Public

    refactored GBS processing

    AgResearch/gbs_prism’s past year of commit activity
    Python 0 0 11 0 Updated Apr 2, 2025
  • eri-support-docs Public Forked from MattBixley/eri-support-docs

    eri-support-docs

    AgResearch/eri-support-docs’s past year of commit activity
    HTML 0 4 0 0 Updated Mar 27, 2025
  • KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    AgResearch/KGD’s past year of commit activity
    R 21 GPL-2.0 16 6 0 Updated Mar 24, 2025
  • GBS-TaFFE Public

    Analysing RE-RRSeq with GTDB taxonomic framework

    AgResearch/GBS-TaFFE’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Mar 20, 2025
  • seffs Public

    Report on the efficiency of Slurm jobs, like seff for multiple jobs

    AgResearch/seffs’s past year of commit activity
    Elvish 0 0 0 0 Updated Mar 19, 2025
  • redun.nix Public

    A flake package for redun

    AgResearch/redun.nix’s past year of commit activity
    Nix 0 0 0 0 Updated Mar 18, 2025
  • tassel3 Public

    Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.

    AgResearch/tassel3’s past year of commit activity
    Java 0 LGPL-2.1 0 0 0 Updated Feb 24, 2025
  • GUS-LD Public

    Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

    AgResearch/GUS-LD’s past year of commit activity
    R 4 GPL-3.0 2 0 0 Updated Feb 20, 2025
  • bbmap.nix Public

    Nix flake for BBMap, a short-read aligner for DNA and RNA-seq data

    AgResearch/bbmap.nix’s past year of commit activity
    Nix 0 MIT 0 0 0 Updated Jan 26, 2025
  • GBSX Public Forked from GenomicsCoreLeuven/GBSX

    GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments

    AgResearch/GBSX’s past year of commit activity
    Java 0 GPL-3.0 6 0 0 Updated Jan 15, 2025

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