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1. genometools genometools Public

   GenomeTools is a collection of algorithms to manipulate genomics related file format. The primary purpose is to convert file formats from one to another.

   Java 5 1

2. atk atk Public

   Abeel Toolkit is set of utility classes that are used in our other projects.

   Java 1 1

3. javaml javaml Public

   Java Machine Learning Library

   Java 60 20

4. nanopore-cenpk113-7d nanopore-cenpk113-7d Public

   Supplementary data for our CENPK113-7D assembly paper

5. hat hat Public

   Haplotype Assembly Tool

   Python 8 2

6. quanttb quanttb Public

   QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.

   Python 6 5