copy header files into cython

cython/sme_python_bridge.h

@@ -0,0 +1,41 @@
+#ifndef IDL_DEFINE
+#define IDL_DEFINE
+// Define IDL String
+typedef int IDL_STRING_SLEN_T;
+#define IDL_STRING_MAX_SLEN 2147483647
+
+typedef struct {		/* Define string descriptor */
+  IDL_STRING_SLEN_T slen;	/* Length of string, 0 for null */
+  short stype;			/* type of string, static or dynamic */
+  char *s;			/* Addr of string */
+} IDL_STRING;
+#endif
+
+// define the external methods
+const char * Python_SMELibraryVersion(); /* Return SME library version */
+const char * Python_GetDataFiles();      /* Return the required data files */
+const char * Python_GetLibraryPath();    /* Return the current data file directory */
+const char * Python_SetLibraryPath(IDL_STRING * path);    /* Set the data file directory */
+const char * Python_InputWaveRange(double wmin, double wmax);    /* Read in Wavelength range */
+const char * Python_SetVWscale(double gamma6);        /* Set van der Waals scaling factor */
+const char * Python_SetH2broad();        /* Set flag for H2 molecule */
+const char * Python_ClearH2broad();      /* Clear flag for H2 molecule */
+const char * Python_InputLineList(int nlines, IDL_STRING * species, double * atomic);     /* Read in line list */
+const char * Python_OutputLineList(int nlines, double * atomic);    /* Return line list */
+const char * Python_UpdateLineList(short nlines, IDL_STRING * species, double * atomic, short * index);    /* Change line list parameters */
+const char * Python_InputModel(short ndepth, double teff, double grav, double wlstd, IDL_STRING * motype, short * opflag, double * depth, double * temp, double * xne, double * xna, double * rho, double * vt, double radius, double * height);        /* Read in model atmosphere */
+const char * Python_InputDepartureCoefficients(double * bmat, int lineindex);
+const char * Python_GetDepartureCoefficients(double * bmat, int nrhox, int line);   /* Get NLTE b's for specific line */
+const char * Python_GetNLTEflags(short * nlte_flags, int nlines);               /* Get line list NLTE flags */
+const char * Python_ResetDepartureCoefficients(); /* Reset LTE */
+const char * Python_InputAbund(double * abund);                 /* Read in abundances */
+const char * Python_Opacity();                    /* Calculate opacities */
+const char * Python_GetOpacity(short ifop, short length, double * result, IDL_STRING * species, IDL_STRING * key);                 /* Returns specific cont. opacity */
+const char * Python_Ionization(short ion);                 /* Perfrom EOS calculations */
+const char * Python_GetDensity(short length, double * result);                 /* Returns density in g/cm^3 */
+const char * Python_GetNatom(short length, double * result);                   /* Returns atomic number density */
+const char * Python_GetNelec(short length, double * result);                   /* Returns electron number density */
+const char * Python_Transf(short nmu, double * mu, double * cint_seg, double * cintr_seg, int nwmax, int nw, double * wint_seg, double * sint_seg, double accrt, double accwi, short keep_lineop, short long_continuum);                     /* Computes spectral synthesis */
+const char * Python_CentralDepth(int nmu, double * mu, int nwsize, float * table, double accrt);               /* Computes line central depths */
+const char * Python_GetLineOpacity(double wave, short nrhox, double * lop, double * cop, double * scr, double * tsf, double * csf);             /* Returns specific line opacity */
+const char * Python_GetLineRange(double * linerange, int nlines);               /* Get validity range for every line */

cython/sme_synth_faster.h

@@ -0,0 +1,66 @@
+
+#ifdef BUILDING_SME_WIN_DLL
+#define SME_DLL __declspec(dllexport)
+#else
+#define SME_DLL
+#endif
+
+// The SME library version (and compilation date)
+#ifndef VERSION
+#define VERSION "6.03, July 2019"
+#endif
+
+/* Datafile locations */
+// DATA_DIR is defined in platform.h
+
+#define DATAFILE_FE "Fe1_Bautista2017.dat.INTEL"
+#define DATAFILE_NH "NH_Stancil2018.dat.INTEL"
+#define DATAFILE_STEHLE "stehle_long.dat.INTEL"
+#define DATAFILE_BPO "bpo_self.grid.INTEL"
+#define DATAFILE_VCS "vcsbalmer.dat"
+
+#ifndef IDL_DEFINE
+#define IDL_DEFINE
+// Define IDL String
+typedef int IDL_STRING_SLEN_T;
+#define IDL_STRING_MAX_SLEN 2147483647
+
+typedef struct {		/* Define string descriptor */
+  IDL_STRING_SLEN_T slen;	/* Length of string, 0 for null */
+  short stype;			/* type of string, static or dynamic */
+  char *s;			/* Addr of string */
+} IDL_STRING;
+#endif
+// define global parameter access
+extern "C" int SME_DLL GetNLINES(void);
+extern "C" short SME_DLL GetNRHOX(void);
+extern "C" char * SME_DLL GetSPNAME(void);
+
+// define the external methods
+extern "C" const char * SME_DLL SMELibraryVersion(int n, void *arg[]); /* Return SME library version */
+extern "C" const char * SME_DLL GetDataFiles(int n, void *arg[]);      /* Return the required data files */
+extern "C" const char * SME_DLL GetLibraryPath(int n, void *arg[]);    /* Return the current data file directory */
+extern "C" const char * SME_DLL SetLibraryPath(int n, void *arg[]);    /* Set the data file directory */
+extern "C" const char * SME_DLL InputWaveRange(int n, void *arg[]);    /* Read in Wavelength range */
+extern "C" const char * SME_DLL SetVWscale(int n, void *arg[]);        /* Set van der Waals scaling factor */
+extern "C" const char * SME_DLL SetH2broad(int n, void *arg[]);        /* Set flag for H2 molecule */
+extern "C" const char * SME_DLL ClearH2broad(int n, void *arg[]);      /* Clear flag for H2 molecule */
+extern "C" const char * SME_DLL InputLineList(int n, void *arg[]);     /* Read in line list */
+extern "C" const char * SME_DLL OutputLineList(int n, void *arg[]);    /* Return line list */
+extern "C" const char * SME_DLL UpdateLineList(int n, void *arg[]);    /* Change line list parameters */
+extern "C" const char * SME_DLL InputModel(int n, void *arg[]);        /* Read in model atmosphere */
+extern "C" const char * SME_DLL InputDepartureCoefficients(int n, void *arg[]);
+extern "C" const char * SME_DLL GetDepartureCoefficients(int n, void *arg[]);   /* Get NLTE b's for specific line */
+extern "C" const char * SME_DLL GetNLTEflags(int n, void *arg[]);               /* Get line list NLTE flags */
+extern "C" const char * SME_DLL ResetDepartureCoefficients(int n, void *arg[]); /* Reset LTE */
+extern "C" const char * SME_DLL InputAbund(int n, void *arg[]);                 /* Read in abundances */
+extern "C" const char * SME_DLL Opacity(int n, void *arg[]);                    /* Calculate opacities */
+extern "C" const char * SME_DLL GetOpacity(int n, void *arg[]);                 /* Returns specific cont. opacity */
+extern "C" const char * SME_DLL Ionization(int n, void *arg[]);                 /* Perfrom EOS calculations */
+extern "C" const char * SME_DLL GetDensity(int n, void *arg[]);                 /* Returns density in g/cm^3 */
+extern "C" const char * SME_DLL GetNatom(int n, void *arg[]);                   /* Returns atomic number density */
+extern "C" const char * SME_DLL GetNelec(int n, void *arg[]);                   /* Returns electron number density */
+extern "C" const char * SME_DLL Transf(int n, void *arg[]);                     /* Computes spectral synthesis */
+extern "C" const char * SME_DLL CentralDepth(int n, void *arg[]);               /* Computes line central depths */
+extern "C" const char * SME_DLL GetLineOpacity(int n, void *arg[]);             /* Returns specific line opacity */
+extern "C" const char * SME_DLL GetLineRange(int n, void *arg[]);               /* Get validity range for every line */

cython/smelib.pyx

@@ -20,7 +20,7 @@ ctypedef short np_short_t
 ctypedef float np_float_t
 ctypedef long np_long_t
 
-cdef extern from "../src/sme/sme_python_bridge.h":
+cdef extern from "sme_python_bridge.h":
     cdef struct s_IDL_STRING:
         int slen
         short stype
@@ -56,7 +56,7 @@ cdef extern from "../src/sme/sme_python_bridge.h":
     const char * Python_GetLineOpacity(double wave, short nmu, double * lop, double * cop, double * scr, double * tsf, double * csf)
     const char * Python_GetLineRange(double * linerange, int nlines)
 
-cdef extern from "../src/sme/sme_synth_faster.h":
+cdef extern from "sme_synth_faster.h":
     int GetNLINES()
     short GetNRHOX()
     char * GetSPNAME()