Fix tests

pyreduce/__init__.py

@@ -5,17 +5,6 @@
 __version__ = get_versions()["version"]
 del get_versions
 
-import matplotlib as mpl
-import matplotlib.pyplot as plt
-
-try:
-    mpl.use("QT5Agg")
-    plt.style.use("seaborn-paper")
-except:
-    pass
-del mpl
-del plt
-
 # add logger to console
 import logging
 

pyreduce/make_shear.py

@@ -256,7 +256,7 @@ def model(coef):
         def model_compressed(coef):
             return np.ma.compressed(model(coef))
 
-        A = np.nanpercentile(img, 95)
+        A = np.nanpercentile(img_compressed, 95)
         sig = (xmax - xmin) / 4  # TODO
         if self.curv_degree == 1:
             shift = lambda curv: curv[0] * y

requirements.txt

@@ -5,9 +5,9 @@ colorlog==6.6.0
 corner==2.2.1
 emcee==3.1.1
 joblib==1.1.0
-jsonschema==4.2.1
-matplotlib==3.5.0
-numpy==1.21.4
+jsonschema==4.3.2
+matplotlib==3.5.1
+numpy==1.22.0
 
 # optional for tools combine
 # git+https://github.com/cylammarco/SpectRes
@@ -17,8 +17,8 @@ pre-commit==2.16.0
 pytest==6.2.5
 pytest-cov==3.0.0
 python-dateutil==2.8.2
-scikit-image==0.18.3
+scikit-image==0.19.1
 scipy==1.7.3
-sphinx==4.3.1
+sphinx==4.3.2
 tqdm==4.62.3
 wget==3.2

test/conftest.py

@@ -4,21 +4,17 @@
 from os.path import dirname, join
 from shutil import rmtree
 
-# This fixes a problem when using the remote debugger
-os.environ["DISPLAY"] = "localhost:10.0"
-
-import numpy as np
+# Stop matplotlib from crashing if interactive plotting does not work
+import matplotlib as mpl
 import pytest
-from astropy.io import fits
 
-from pyreduce import configuration, datasets, echelle, instruments, util
+mpl.use("agg")
+
+from pyreduce import configuration, datasets, instruments
 from pyreduce.reduce import (
     BackgroundScatter,
     Bias,
-    ContinuumNormalization,
-    Finalize,
     Flat,
-    LaserFrequencyCombFinalize,
     Mask,
     NormalizeFlatField,
     OrderTracing,