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electro_kinetic_flows into master #4

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0c37496
add files from electro_kinetic_flows branch
ajnonaka Aug 9, 2019
a4a5f50
added two cases
jbbel Aug 15, 2019
a4aa6e4
made inputs bousinesq
jbbel Oct 2, 2019
5948d0c
starting point for comparison to immersed ion code for paper. doing …
ajnonaka Oct 7, 2019
7a0964e
Merge branch 'electro_kinetic_flows' of https://github.com/AMReX-FHD/…
ajnonaka Oct 7, 2019
2346450
comparison to immersed ion code (electroosmosis)
ajnonaka Nov 27, 2019
fc659f6
fine tune EO parameters
ajnonaka Nov 27, 2019
6b88dd5
use neumann charge density walls for EO comparison
ajnonaka Dec 19, 2019
05f230f
updated EO problem
ajnonaka Jan 14, 2020
b276256
implement resetting of time-averaged profiles in plotfile
ajnonaka Jan 14, 2020
8a291c9
Merge branch 'master' into electro_kinetic_flows
ajnonaka May 27, 2020
e53d965
Merge pull request #3 from AMReX-FHD/master
ajnonaka Sep 2, 2020
f3a0852
Merge branch 'master' into electro_kinetic_flows
ajnonaka Sep 2, 2020
73389ba
Merge branch 'electro_kinetic_flows' of https://github.com/AMReX-FHD/…
ajnonaka Sep 2, 2020
7f33f3b
sync
ajnonaka Sep 3, 2020
9c877b8
sync with master
ajnonaka Sep 3, 2020
bab23d6
sync with master
ajnonaka Sep 3, 2020
8b8a105
sync up bugfixes from master
ajnonaka Sep 3, 2020
a2d672b
Merge branch 'master' into electro_kinetic_flows
ajnonaka Sep 3, 2020
2cb363a
Merge branch 'master' into electro_kinetic_flows
ajnonaka Sep 3, 2020
c7fcc14
Merge branch 'master' into electro_kinetic_flows
ajnonaka Nov 12, 2020
e6f5aea
Merge branch 'master' into electro_kinetic_flows
ajnonaka Nov 12, 2020
a302546
Merge branch 'master' into electro_kinetic_flows
ajnonaka Nov 12, 2020
f67cbb2
Merge branch 'master' into electro_kinetic_flows
ajnonaka Jan 25, 2021
f5c8902
Merge branch 'master' into electro_kinetic_flows
ajnonaka Jan 25, 2021
f9da9a1
Merge branch 'master' into electro_kinetic_flows
ajnonaka Jan 30, 2021
2512bf8
Merge branch 'master' into electro_kinetic_flows
ajnonaka Feb 2, 2021
c41d912
Merge branch 'master' into electro_kinetic_flows
ajnonaka Feb 10, 2021
6498664
working on galen setup
ajnonaka Aug 10, 2021
af499e4
increase dt
ajnonaka Aug 10, 2021
8992d20
longer run
ajnonaka Aug 11, 2021
9447fc0
deterministic comparison
ajnonaka Aug 25, 2021
4da6b23
convergence test
ajnonaka Aug 25, 2021
3416d82
Updated for ubuntu 22 on Donev laptop
adonev Mar 27, 2023
dc3f56d
Updated cims.nyu.edu makefiles marked Donev
adonev Mar 29, 2023
b26a025
Modified Makefile for Donev laptop
adonev Apr 5, 2023
dc04d99
Removed LAPACK95 and fixed Donev Makefiles
adonev Apr 5, 2023
db565eb
Linking to ubuntu's BLAS and LAPACK on ubuntu Donev
adonev Apr 5, 2023
dbcd6aa
Aref inputs
adonev Apr 5, 2023
a6f3949
Working on Aref input file
adonev Apr 5, 2023
4253067
Makefile.Donev improvements
adonev Apr 6, 2023
b026b6b
Makefile.Donev improvements
adonev Apr 6, 2023
d563ebd
Working on electro-osmosis
adonev Apr 6, 2023
aaa52ea
Switched to ifx+icc for Intel OneAPI 2023
adonev Apr 6, 2023
a203a99
Finalized input file for Aref
adonev Apr 6, 2023
d9ef136
Fixed a division by zero (mod) bug in the main driver so it works wit…
adonev Apr 6, 2023
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fine tune EO parameters
ajnonaka committed Nov 27, 2019
commit fc659f68fff90af263f4ac036f1d0f5cca0a903d
Original file line number Diff line number Diff line change
@@ -77,7 +77,7 @@
! positive = assume constant coefficients
! negative = assume spatially-varying coefficients
visc_type = 2
visc_coef = 1.05d-2 ! momentum diffusion coefficient 'eta'
visc_coef = 1.d-2 ! momentum diffusion coefficient 'eta'

advection_type = 0 ! 0 = centered explicit
! 1 = unlimited bilinear bds in space and time
@@ -186,7 +186,7 @@

use_charged_fluid = T
print_debye_len = T ! if the simulation has a single, well-defined Debye length, print it off at beginning of run
dielectric_const = 6.91d-19 ! relative permitivity ~ 78, vacuum permitivity ~ 8.854d-21
dielectric_const = 6.9296d-19 ! relative permitivity ~ 78, vacuum permitivity ~ 8.854d-21
charge_per_mass(1:3) = 4194.d0 -2720.d0 0.d0

! 1 = Dirichlet (fixed potential)
Original file line number Diff line number Diff line change
@@ -77,7 +77,7 @@
! positive = assume constant coefficients
! negative = assume spatially-varying coefficients
visc_type = 2
visc_coef = 1.05d-2 ! momentum diffusion coefficient 'eta'
visc_coef = 1.d-2 ! momentum diffusion coefficient 'eta'

advection_type = 0 ! 0 = centered explicit
! 1 = unlimited bilinear bds in space and time