Add standalone PDB ↔ token inference scripts #6
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Description
This PR adds two lightweight standalone scripts for PDB ↔ token conversion, addressing issue #5.
Changes Made
These scripts follow the logic from the original
reconstruct.pybut with simplified I/O and no batching for easier standalone use.Motivation
These scripts enable independent validation and benchmarking of FoldToken's tokenization pipeline, as discussed in issue #5. They maintain accuracy while providing a more accessible interface for researchers.
@gaozhangyang Please review and let me know if any adjustments are needed!