README.md

TadPole 🐸 - Improving functional annotation of virus genes

Authors

• ukmrs (https://github.com/ukmrs)
• 777moneymaker
• phenolophthaleinum (https://github.com/phenolophthaleinum)
• LeonessaDeArgentum (https://github.com/LeonessaDeArgentum)

Two parsers versions:

• poteznyparser written in Rust by ukmrs
• pajtonparser written in Python by 777moneymaker using initial code from phenolophthaleinum and part of the design idea from ukmrs

Usage and example

>>> python parsers/pajtonparser/pajtonparser.py --help

usage: TadPole [-h] [-d DISTANCE] -o OUTPUT [--number] [--collapse] phrog_dir gff_dir

viruses go brrr lol

positional arguments:
  phrog_dir
  gff_dir

optional arguments:
  -h, --help            show this help message and exit
  -d DISTANCE, --distance DISTANCE
  -o OUTPUT, --output OUTPUT
                        prefix/prefix-path for output files
  --number              Add numbers to jokers?
  --collapse            Should we collapse unknown proteins into one string with prefix?

Yo