bugfix - set homosapiens back as default species in query fucntions

Author: yutanagano

src/tidytcells/mh/_query.py

@@ -16,7 +16,7 @@
 
 
 def query(
-    species: str,
+    species: Optional[str] = None,
     precision: Optional[Literal["allele", "gene"]] = None,
     contains_pattern: Optional[str] = None,
 ) -> FrozenSet[str]:

src/tidytcells/tr/_query.py

@@ -17,7 +17,7 @@
 
 
 def query(
-    species: str,
+    species: Optional[str] = None,
     precision: Optional[str] = None,
     functionality: Optional[str] = None,
     contains_pattern: Optional[str] = None,

tests/test_mh.py

@@ -189,6 +189,12 @@ def test_query_contains(
         assert expected_in in result
         assert not expected_not_in in result
 
+    def test_query_default_species(self):
+        result = mh.query(precision="gene", contains_pattern="DR")
+
+        assert len(result) == 10
+        assert "HLA-DRA" in result
+
 
 class TestGetChain:
     @pytest.mark.parametrize(

tests/test_tr.py

@@ -233,6 +233,11 @@ def test_query_functionality(
         assert expected_in in result
         assert not expected_not_in in result
 
+    def test_query_default_species(self):
+        result = tr.query(precision="gene", contains_pattern="AJ")
+        assert len(result) == 61
+        assert "TRAJ11" in result
+
 
 class TestGetAaSequence:
     @pytest.mark.parametrize(