Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Scalar names that are more BIDS compliant #1154

Open
arokem opened this issue Aug 22, 2024 · 0 comments
Open

Scalar names that are more BIDS compliant #1154

arokem opened this issue Aug 22, 2024 · 0 comments

Comments

@arokem
Copy link
Collaborator

arokem commented Aug 22, 2024

I just learned from @mattcieslak about their efforts to push ahead qsirecon (and the upcoming split between qsiprep and qsirecon). One of the elements of this is a push to be more compliant with the current BIDS BEP16 draft. Here is an example of what that looks like in practice:

https://github.com/PennLINC/qsirecon/blob/main/qsirecon/tests/data/scalar_mapper_outputs.txt

I think that we want to push in a similar direction with the filenames that we produce for model-derived scalars, but at the very least, we need to reconsider how the ImageFile object reads in scalars produced by other pipelines (i.e., this) so that we can easily ingest qsirecon outputs as part of our pipeline.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant