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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(extractSCE)
export(extractSeurat)
export(sc_violinClass)
export(plot_umap)
export(addToST)
export(assign_cate)
export(prep_umap_class)
export(plot_attr)
export(plot_metrics)
export(plot_PRs)
export(.steam_dbscan)
export(.steam_dt)
export(splitCommon)
export(GEP_makeMean)
export(addRandToSampTab)
export(annSetUp)
export(butter_classGenes)
export(butter_classify)
export(cn_correctZmat)
export(compileGSEA)
export(corplot_sub)
export(corplot_triangle)
export(csRenameOrth)
export(cutTreeToNames)
export(divide_sampTab)
export(dotplot_pipesteamed)
export(downSampleW)
export(easy_assess)
export(enrDiff)
export(extractImport)
export(fgsea.wrapper.set)
export(findBestPairs)
export(findClassyGenes)
export(findVarGenes)
export(find_top_pc)
export(getClassGenes)
export(getGenesFromGO)
export(getSpecGenes)
export(getTopGenes)
export(getTopGenesList)
export(getUniqueGenes)
export(gnrAll)
export(gnrBP)
export(gpa)
export(gpa_recurse)
export(harmonize)
export(hmClass)
export(hm_enr)
export(hm_genes)
export(hm_gpa_sel)
export(hm_varGenes)
export(hmcellsgenes)
export(hmgenesSimple)
export(hmgenesSimple2)
export(ks.extract)
export(ks.extract.more)
export(ks.wrapper)
export(ks.wrapper.set)
export(load10x)
export(load10x_mtx)
export(loadLoomExp)
export(loadLoomExpCluster)
export(makeClassifier)
export(makeSampleTable)
export(makeRFs)
export(mclust_Mat)
export(mergeLoad10x)
export(mp_hmVars)
export(multiplot)
export(pair_transform)
export(pca_to_tsne)
export(pipe_butter)
export(pipe_cAss)
export(pipe_cAss_all)
export(pipe_dbscan)
export(pipe_steam_list)
export(pipe_treecut)
export(plotDBscan)
export(plotGPA)
export(plotGPA1)
export(plotGPALevel)
export(plotGPApca)
export(plotGPArec)
export(plotGPArecTrans)
export(plot_pca_gpa)
export(plot_tsne)
export(prebutter)
export(prebutter2)
export(prewash)
export(probTrans)
export(pruneAndScan)
export(ptsne)
export(ptGetTop)
export(query_transform)
export(randomize)
export(removeRed)
export(reorderCellsByGrp)
export(rf_classPredict)
export(sc_classify)
export(sc_compAlpha)
export(sc_compMu)
export(sc_filterCells)
export(sc_filterGenes)
export(sc_findEnr)
export(sc_hmClass)
export(sc_makeClassifier)
export(sc_plot_statTab)
export(sc_sampR_to_pattern)
export(sc_statTab)
export(sc_testPattern)
export(sc_trans_rnaseq)
export(scn_trainNorm)
export(simple_steam_cuttree)
export(simple_steam_dbscan)
export(simple_steam_mclust)
export(skylineClass)
export(steam_dbscan)
export(steam_mclust)
export(steam_treecut)
export(trans_binarize)
export(trans_prop)
export(trans_zscore)
export(tsneClass)
export(tsneMult)
export(tsneMultsimp)
export(utils_loadObject)
export(utils_myDate)
export(utils_myDist)
export(utils_strip_fname)
export(utils_stripwhite)
export(vg_pca)
export(wash)
export(weighted_down)
export(plot_multiAssess)
export(assessmentReport_comm)
export(assess_comm)
import(parallel)
import(RColorBrewer)
import(fgsea)
import(devtools)
import(randomForest)
import(ggplot2)
import(dplyr)
import(umap)
import(DescTools)
import(patchwork)
import(pheatmap)
import(viridis)
import(cowplot)
import(reshape2)