From 2793af9cbdaced2da2075a5a75cb7243a80fa6ad Mon Sep 17 00:00:00 2001 From: Malachi Griffith Date: Tue, 15 Oct 2024 08:29:38 -0500 Subject: [PATCH] increase disk request for vep annotation step --- definitions/tools/vep.wdl | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/definitions/tools/vep.wdl b/definitions/tools/vep.wdl index 28a3774..c5612b3 100644 --- a/definitions/tools/vep.wdl +++ b/definitions/tools/vep.wdl @@ -26,10 +26,10 @@ task vepTask { File? synonyms_file } - Float cache_size = 2*size(cache_dir_zip, "GB") # doubled to unzip - Float vcf_size = 2*size(vcf, "GB") # doubled for output vcf + Float cache_size = 3*size(cache_dir_zip, "GB") # tripled to unzip + Float vcf_size = 3*size(vcf, "GB") # tripled for output vcf Float reference_size = size([reference, reference_fai, reference_dict], "GB") - Int space_needed_gb = 10 + round(reference_size + vcf_size + cache_size + size(synonyms_file, "GB")) + Int space_needed_gb = 20 + round(reference_size + vcf_size + cache_size + size(synonyms_file, "GB")) runtime { preemptible: 1 maxRetries: 2