circle.yml

machine:                                                                                                                               
  python:                                                                                                                                                                
    version: 3.5.0
dependencies:
  pre:
    - git clone git@github.com:woolfson-group/dependencies_for_isambard.git
    # Scwrl
    - chmod +x /home/ubuntu/isambard/dependencies_for_isambard/scwrl/install_Scwrl4_Linux
    - /home/ubuntu/isambard/dependencies_for_isambard/scwrl/install_Scwrl4_Linux < /home/ubuntu/isambard/dependencies_for_isambard/scwrl/scwrl_install.txt
    # Reduce
    - chmod +x /home/ubuntu/isambard/dependencies_for_isambard/reduce/reduce.3.23.130521.linuxi386
    # DSSP
    - chmod +x /home/ubuntu/isambard/dependencies_for_isambard/dssp/dssp-2.0.4
    - pip install --upgrade pip
    - pip install --upgrade setuptools
    - pip install -r requirements.txt
  override:
    - python setup.py build_ext --inplace
test:
  override:
    - cd /home/ubuntu/isambard
    - python isambard/configure.py -C
    - nosetests unit_tests/ --with-coverage --cover-package=add_ons --cover-package=ampal --cover-package=buff --cover-package=external_programs --cover-package=optimisation --cover-package=tools
    - nosetests isambard/ --with-doctest
  post:
    - bash <(curl -s https://codecov.io/bash)