From c4ec74dfba383e02123d15fd47dd876db295cfa8 Mon Sep 17 00:00:00 2001
From: asterakin <styl.stella@Gmail.com>
Date: Thu, 21 Jul 2016 11:37:46 -0700
Subject: [PATCH] consensus selection of cell file names correction

---
 Internal/getCellFiles.m    | 4 +++-
 viz/makeConsensusArray.m   | 2 +-
 viz/superSeggerViewerGui.m | 2 +-
 3 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/Internal/getCellFiles.m b/Internal/getCellFiles.m
index a184d14..c78ee12 100644
--- a/Internal/getCellFiles.m
+++ b/Internal/getCellFiles.m
@@ -40,7 +40,9 @@
 
 cellNames = {contents.name}';
 rightCells=regexpi(cellNames,'[cC]ell\d+.mat','once');
-rightCellNames = cellNames(cell2mat(rightCells));
+ids = find(cell2mat(rightCells));
+
+rightCellNames = {cellNames{ids}};
 
 if numel(rightCellNames) == 0
     error('No cell files found')
diff --git a/viz/makeConsensusArray.m b/viz/makeConsensusArray.m
index 1a6b85f..b9a1cad 100644
--- a/viz/makeConsensusArray.m
+++ b/viz/makeConsensusArray.m
@@ -90,7 +90,7 @@
 end
 
 % Get the number of cells in the cell directory
-cellNames = getCellFiles (cellDir,CONST)
+cellNames = getCellFiles (cellDir,CONST);
 
 numCells = numel(cellNames);
 
diff --git a/viz/superSeggerViewerGui.m b/viz/superSeggerViewerGui.m
index 4ada1aa..462a77c 100644
--- a/viz/superSeggerViewerGui.m
+++ b/viz/superSeggerViewerGui.m
@@ -1439,7 +1439,7 @@ function makeFieldMovie(handles)
             [data_r, data_c, data_f] = intLoadDataViewer( handles.dirname_seg, ...
                 handles.contents, ii, handles.num_im, handles.clist, handles.FLAGS);
             showSeggerImage( data_c, data_r, data_f, handles.FLAGS, handles.clist, handles.CONST, handles.axes1);
-            drawnow;
+            drawnow;           
             mov(counter) = getframe;
             counter = counter + 1;
             handles.message.String = ['Frame number: ', num2str(ii)];