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Support CRAM Files #386

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tshauck opened this issue Feb 6, 2024 · 3 comments
Open

Support CRAM Files #386

tshauck opened this issue Feb 6, 2024 · 3 comments

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@tshauck
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tshauck commented Feb 6, 2024

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@tshauck
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tshauck commented Feb 15, 2024

records looks to be the main way into the iterator... need to deal with the lifetimes somehow... https://github.com/zaeleus/noodles/blob/master/noodles-cram/examples/cram_view_async.rs

@tshauck
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tshauck commented Feb 17, 2024

I have a record stream... I think.

Otherwise, it looks like the CRAM record implements a SAM alignment record, so perhaps a first pass, see if we can reuse some of the SAM functionality in a similar way that it's that way for BAM.

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tshauck commented Feb 17, 2024

Almost there... big issue right now is that Repository isn't Sync meaning I cannot use it in FileOpener in its current state. 🤔

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