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test_04_TestCasesEff.genes.txt
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test_04_TestCasesEff.genes.txt
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# The following table is formatted as tab separated values.
#GeneName GeneId TranscriptId BioType variants_impact_HIGH variants_impact_LOW variants_impact_MODERATE variants_impact_MODIFIER variants_effect_3_prime_UTR_variant variants_effect_5_prime_UTR_premature_start_codon_gain_variant variants_effect_5_prime_UTR_variant variants_effect_conservative_inframe_deletion variants_effect_disruptive_inframe_deletion variants_effect_downstream_gene_variant variants_effect_frameshift_variant variants_effect_initiator_codon_variant variants_effect_intron_variant variants_effect_missense_variant variants_effect_non_coding_transcript_exon_variant variants_effect_sequence_feature variants_effect_splice_acceptor_variant variants_effect_splice_donor_variant variants_effect_splice_region_variant variants_effect_start_lost variants_effect_stop_gained variants_effect_synonymous_variant variants_effect_upstream_gene_variant
AC000089.3 ENSG00000235776 ENST00000424559 processed_pseudogene 0 0 0 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51
ADORA2A ENSG00000128271 ENST00000337539 protein_coding 1 41 39 12 2 2 5 0 0 0 1 0 5 39 0 1 0 0 0 0 0 38 0
ADORA2A ENSG00000128271 ENST00000417596 protein_coding 1 40 39 12 2 2 5 0 0 0 1 0 5 39 0 0 0 0 0 0 0 38 0
ADORA2A ENSG00000128271 ENST00000424232 protein_coding 0 16 10 9 0 2 5 0 0 4 0 0 0 10 0 0 0 0 0 0 0 14 0
ADORA2A ENSG00000128271 ENST00000436735 protein_coding 0 12 7 16 0 2 5 0 0 11 0 0 0 7 0 0 0 0 0 0 0 10 0
ADORA2A ENSG00000128271 ENST00000439591 protein_coding 0 16 10 9 0 2 5 0 0 4 0 0 0 10 0 0 0 0 0 0 0 14 0
ADORA2A ENSG00000128271 ENST00000444262 protein_coding 1 39 34 18 0 2 5 0 0 8 1 0 5 34 0 0 0 0 1 0 0 37 0
ADORA2A ENSG00000128271 ENST00000464977 processed_transcript 0 2 0 31 0 0 0 0 0 25 0 0 0 0 8 0 0 0 2 0 0 0 0
ADORA2A ENSG00000128271 ENST00000467385 processed_transcript 0 0 0 33 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0
ADORA2A ENSG00000128271 ENST00000472248 processed_transcript 0 0 0 33 0 0 0 0 0 17 0 0 0 0 16 0 0 0 0 0 0 0 0
ADORA2A ENSG00000128271 ENST00000486108 processed_transcript 0 0 0 33 0 0 0 0 0 3 0 0 0 0 30 0 0 0 0 0 0 0 0
ADORA2A ENSG00000128271 ENST00000486351 processed_transcript 0 0 0 33 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0
ADORA2A ENSG00000128271 ENST00000496258 processed_transcript 0 0 0 33 0 0 0 0 0 4 0 0 0 0 29 0 0 0 0 0 0 0 0
ADORA2A ENSG00000128271 ENST00000496497 processed_transcript 0 1 0 89 0 0 0 0 0 20 0 0 35 0 35 0 0 0 1 0 0 0 0
ADORA2A ENSG00000128271 ENST00000541988 protein_coding 1 39 39 12 2 1 3 0 0 0 1 0 7 39 0 0 0 0 0 0 0 38 0
ADORA2A-AS1 ENSG00000178803 ENST00000326341 protein_coding 0 0 0 90 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 0 0
ADORA2A-AS1 ENSG00000178803 ENST00000427813 processed_transcript 0 0 0 90 0 0 0 0 0 33 0 0 57 0 0 0 0 0 0 0 0 0 0
ADORA2A-AS1 ENSG00000178803 ENST00000543438 protein_coding 0 0 0 90 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 0 0
ADRBK2 ENSG00000100077 ENST00000324198 protein_coding 4 51 50 111 3 1 5 0 0 0 2 0 112 50 0 1 0 0 15 0 2 40 0
ADRBK2 ENSG00000100077 ENST00000455558 nonsense_mediated_decay 0 5 0 97 14 0 0 0 0 19 0 0 42 0 17 0 0 0 5 0 0 0 10
C22orf29 ENSG00000215012 ENST00000328554 protein_coding 7 18 51 4 3 0 1 1 1 0 2 0 0 49 0 0 0 0 0 0 5 18 0
C22orf29 ENSG00000215012 ENST00000405640 protein_coding 7 18 51 4 3 0 1 1 1 0 2 0 0 49 0 0 0 0 0 0 5 18 0
C22orf29 ENSG00000215012 ENST00000407472 protein_coding 7 18 51 4 3 0 1 1 1 0 2 0 0 49 0 0 0 0 0 0 5 18 0
C22orf29 ENSG00000215012 ENST00000416337 protein_coding 2 3 21 54 0 0 1 1 0 53 0 0 0 20 0 0 0 0 1 0 2 3 0
C22orf29 ENSG00000215012 ENST00000484072 processed_transcript 0 0 0 80 0 0 0 0 0 0 0 0 80 0 0 0 0 0 0 0 0 0 0
CTA-407F11.6 ENSG00000224003 ENST00000418510 processed_pseudogene 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
CTA-407F11.8 ENSG00000234884 ENST00000412773 antisense 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11
CTA-407F11.8 ENSG00000234884 ENST00000422876 antisense 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11
CTA-407F11.8 ENSG00000234884 ENST00000453811 antisense 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11
GAPDHP37 ENSG00000231907 ENST00000442317 processed_pseudogene 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
GNAZ ENSG00000128266 ENST00000248996 protein_coding 0 47 13 17 7 0 1 0 0 0 0 0 9 13 0 0 0 0 0 0 0 47 0
GNAZ ENSG00000128266 ENST00000479571 processed_transcript 0 0 0 35 0 0 0 0 0 12 0 0 7 0 16 0 0 0 0 0 0 0 0
GNAZ ENSG00000128266 ENST00000492538 processed_transcript 0 0 0 42 0 0 0 0 0 41 0 0 0 0 1 0 0 0 0 0 0 0 0
GNB1L ENSG00000185838 ENST00000329517 protein_coding 2 48 57 129 14 0 1 0 0 0 0 0 117 57 0 0 1 1 4 0 0 47 0
GNB1L ENSG00000185838 ENST00000403325 protein_coding 2 48 57 129 14 0 1 0 0 0 0 0 117 57 0 0 1 1 4 0 0 47 0
GNB1L ENSG00000185838 ENST00000405009 protein_coding 2 33 35 166 3 0 1 0 0 0 0 0 165 35 0 0 0 2 4 0 0 32 0
GNB1L ENSG00000185838 ENST00000453108 protein_coding 0 15 14 110 0 0 1 0 0 3 0 0 106 14 0 0 0 0 0 0 0 15 0
GNB1L ENSG00000185838 ENST00000460402 processed_transcript 1 3 0 232 0 0 0 0 0 0 0 0 145 0 91 0 1 0 3 0 0 0 0
GNB1L ENSG00000185838 ENST00000481086 processed_transcript 0 2 0 183 0 0 0 0 0 0 0 0 140 0 45 0 0 0 2 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000417194 processed_transcript 0 0 0 212 0 0 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 122
GUSBP11 ENSG00000228315 ENST00000421064 processed_transcript 0 0 0 246 0 0 0 0 0 0 0 0 212 0 34 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000422506 processed_transcript 0 0 0 246 0 0 0 0 0 0 0 0 246 0 0 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000423913 processed_transcript 0 0 0 158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158
GUSBP11 ENSG00000228315 ENST00000431764 unprocessed_pseudogene 0 0 0 246 0 0 0 0 0 153 0 0 88 0 5 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000432595 processed_transcript 0 0 0 88 0 0 0 0 0 88 0 0 0 0 0 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000435868 transcribed_unprocessed_pseudogene 0 0 0 246 0 0 0 0 0 0 0 0 246 0 0 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000437862 processed_transcript 0 0 0 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75
GUSBP11 ENSG00000228315 ENST00000438858 processed_transcript 0 0 0 158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158
GUSBP11 ENSG00000228315 ENST00000445682 processed_transcript 0 0 0 246 0 0 0 0 0 0 0 0 212 0 34 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000451837 processed_transcript 0 0 0 246 0 0 0 0 0 0 0 0 212 0 34 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000451919 processed_transcript 0 0 0 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87
GUSBP11 ENSG00000228315 ENST00000452737 processed_transcript 0 0 0 246 0 0 0 0 0 0 0 0 246 0 0 0 0 0 0 0 0 0 0
GUSBP11 ENSG00000228315 ENST00000455485 processed_transcript 0 0 0 211 0 0 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 121
GUSBP11 ENSG00000228315 ENST00000458554 processed_transcript 0 0 0 158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 158
MCHR1 ENSG00000128285 ENST00000249016 protein_coding 2 47 76 11 5 0 2 1 0 0 1 0 5 75 0 1 0 0 1 0 1 45 0
MCHR1 ENSG00000128285 ENST00000381433 protein_coding 2 44 66 23 5 0 2 1 0 0 1 0 17 65 0 0 0 0 1 0 1 43 0
MCHR1 ENSG00000128285 ENST00000465662 processed_transcript 0 1 0 134 0 0 0 0 0 63 0 0 3 0 26 0 0 0 1 0 0 0 43
MCHR1 ENSG00000128285 ENST00000498400 processed_transcript 0 1 0 134 0 0 0 0 0 0 0 0 46 0 89 0 0 0 1 0 0 0 0
OR11H1 ENSG00000130538 ENST00000252835 protein_coding 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
RAC2 ENSG00000128340 ENST00000249071 protein_coding 0 21 8 69 0 0 6 1 0 0 0 0 64 7 0 2 0 0 3 0 0 18 0
RAC2 ENSG00000128340 ENST00000401529 protein_coding 0 8 3 33 0 0 6 0 0 0 0 0 27 3 0 0 0 0 0 0 0 8 0
RAC2 ENSG00000128340 ENST00000405484 protein_coding 0 20 8 68 0 0 6 1 0 0 0 0 64 7 0 0 0 0 3 0 0 18 0
RAC2 ENSG00000128340 ENST00000406508 protein_coding 0 18 8 71 0 1 3 1 0 0 0 0 70 7 0 0 0 0 3 0 0 15 0
RAC2 ENSG00000128340 ENST00000441619 protein_coding 0 13 2 81 0 0 6 1 0 13 0 0 64 1 0 0 0 0 3 0 0 11 0
RAC2 ENSG00000128340 ENST00000469532 retained_intron 0 1 0 75 0 0 0 0 0 18 0 0 43 0 15 0 0 0 1 0 0 0 0
RAC2 ENSG00000128340 ENST00000481215 retained_intron 0 1 0 51 0 0 0 0 0 0 0 0 13 0 25 0 0 0 1 0 0 0 14
RGL4 ENSG00000159496 ENST00000290691 protein_coding 13 62 92 79 7 0 0 1 0 0 6 0 88 91 0 0 1 1 22 0 5 48 0
RGL4 ENSG00000159496 ENST00000401461 protein_coding 9 47 63 132 7 5 23 1 0 0 5 0 116 62 0 0 1 1 19 0 2 30 0
RGL4 ENSG00000159496 ENST00000423392 protein_coding 14 64 96 72 0 0 0 1 0 0 6 0 88 95 0 0 1 1 22 0 6 50 0
RGL4 ENSG00000159496 ENST00000441897 nonsense_mediated_decay 2 22 0 258 36 0 0 0 0 0 0 0 85 0 161 0 1 1 22 0 0 0 0
RGL4 ENSG00000159496 ENST00000452208 protein_coding 3 16 27 200 7 0 0 1 0 0 2 0 41 26 0 0 0 0 8 0 1 10 158
RGL4 ENSG00000159496 ENST00000460003 retained_intron 2 19 0 225 0 0 0 0 0 0 0 0 80 0 166 0 1 1 19 0 0 0 0
RGL4 ENSG00000159496 ENST00000460167 processed_transcript 0 0 0 156 0 0 0 0 0 18 0 0 6 0 11 0 0 0 0 0 0 0 121
RGL4 ENSG00000159496 ENST00000467354 retained_intron 2 19 0 225 0 0 0 0 0 0 0 0 83 0 163 0 1 1 19 0 0 0 0
RNA5SP494 ENSG00000222585 ENST00000410653 rRNA 0 0 0 33 0 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0 0 0 11
RTDR1 ENSG00000100218 ENST00000216036 protein_coding 0 0 0 77 0 0 0 0 0 0 0 0 77 0 0 0 0 0 0 0 0 0 0
RTDR1 ENSG00000100218 ENST00000421213 protein_coding 0 0 0 35 0 0 0 0 0 35 0 0 0 0 0 0 0 0 0 0 0 0 0
SPECC1L ENSG00000258555 ENST00000358654 nonsense_mediated_decay 0 0 0 175 85 0 0 0 0 0 0 0 5 0 85 0 0 0 0 0 0 0 0
SSTR3 ENSG00000183473 ENST00000328544 protein_coding 4 59 76 7 2 0 5 1 1 0 3 1 0 74 0 0 0 0 0 1 0 58 0
SSTR3 ENSG00000183473 ENST00000402501 protein_coding 4 59 76 7 2 0 5 1 1 0 3 1 0 74 0 0 0 0 0 1 0 58 0
TBX1 ENSG00000184058 ENST00000359500 protein_coding 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
Z82188.1 ENSG00000255594 ENST00000417990 pseudogene 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20