-
Notifications
You must be signed in to change notification settings - Fork 10
/
NAMESPACE
309 lines (308 loc) · 8.46 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
# Generated by roxygen2: do not edit by hand
S3method(forecast,runjags)
S3method(forecast,tsglm)
export(NMME_urls)
export(about_md_path)
export(about_tab)
export(add_forecast_newmoons)
export(add_new_dataset)
export(add_new_model)
export(add_observations_to_forecast_table)
export(app_events)
export(app_paths)
export(app_server)
export(app_theme)
export(app_ui)
export(available_datasets)
export(available_historic_end_newmoonnumbers)
export(available_models)
export(available_newmoonnumbers)
export(available_species)
export(break_line)
export(break_lines)
export(cast)
export(castle)
export(climate_forecasts_paths)
export(covariates_path)
export(covariates_tab)
export(create_dir)
export(data_path)
export(data_sources_section)
export(dataset_controls_template)
export(datasets_controls)
export(directory_files)
export(directory_resources)
export(directory_settings)
export(directory_subdirectories)
export(download_archive)
export(download_climate_forecasts)
export(ensemble_forecasts)
export(evaluate_forecast)
export(evaluate_forecasts)
export(evaluation_tab)
export(evaluation_tab_input_selection_checks_row)
export(evaluation_tab_input_selection_row)
export(evaluation_tab_input_selection_row_dataset)
export(evaluation_tab_input_selection_row_historic_end_newmoonnumber)
export(evaluation_tab_input_selection_row_model)
export(evaluation_tab_input_selection_row_newmoonnumber)
export(evaluation_tab_input_selection_row_species)
export(event_reaction)
export(file_ext)
export(fill_app)
export(fill_data)
export(fill_dir)
export(fill_fits)
export(fill_forecasts)
export(fill_models)
export(fill_resources)
export(fit_runjags)
export(fits_path)
export(forecast_tab)
export(forecast_tab_input_selection_checks_row)
export(forecast_tab_input_selection_row)
export(forecast_tab_input_selection_row_dataset)
export(forecast_tab_input_selection_row_historic_end_newmoonnumber)
export(forecast_tab_input_selection_row_model)
export(forecast_tab_input_selection_row_species)
export(forecasts_evaluations_path)
export(forecasts_metadata_path)
export(forecasts_path)
export(forecasts_results_path)
export(foy)
export(global_list)
export(ifnull)
export(initial_output)
export(initial_reactive_values)
export(main_panel)
export(make_model_combinations)
export(messageq)
export(meta_tsglm)
export(metadata_path)
export(model_controls_template)
export(models_controls)
export(models_controls_path)
export(models_html_path)
export(models_path)
export(models_rmd_path)
export(models_tab)
export(named_null_list)
export(new_dataset_args)
export(new_dataset_controls)
export(new_dataset_fun)
export(new_dataset_metadata)
export(new_model_controls)
export(new_model_datasets)
export(new_model_fit)
export(new_model_forecast)
export(new_model_interpolate)
export(new_model_metadata)
export(new_model_response)
export(newmoons_path)
export(package_version_finder)
export(paths)
export(plot_covariates)
export(plot_forecast_point)
export(plot_forecast_ts)
export(plot_forecasts_cov_RMSE)
export(plot_forecasts_error_lead)
export(portal_data_href)
export(portal_ndvi_href)
export(portal_project_href)
export(portal_weather_href)
export(portalcast)
export(post_process)
export(prefab_datasets)
export(prefab_datasets_controls)
export(prefab_models)
export(prefab_models_controls)
export(prefab_species)
export(prepare_abundance)
export(prepare_covariates)
export(prepare_dataset)
export(prepare_metadata)
export(prepare_newmoons)
export(prepare_rodents)
export(process_model_output)
export(production_settings)
export(read_climate_forecasts)
export(read_covariates)
export(read_data)
export(read_datasets_controls)
export(read_directory_configuration)
export(read_directory_settings)
export(read_forecast_metadata)
export(read_forecast_table)
export(read_forecasts_evaluations)
export(read_forecasts_metadata)
export(read_forecasts_tables)
export(read_metadata)
export(read_model_fit)
export(read_model_forecast)
export(read_models_controls)
export(read_newmoons)
export(read_rodents)
export(read_rodents_dataset)
export(resources_path)
export(rodents_dataset_path)
export(rodents_datasets_controls_path)
export(rodents_profiles_csv_path)
export(rodents_profiles_html_path)
export(rodents_profiles_tab)
export(round_na.interp)
export(run_app)
export(runjags_controls)
export(runjags_data)
export(runjags_inits)
export(runjags_model)
export(runjags_monitors)
export(sandbox_settings)
export(select_forecasts)
export(selected_dataset)
export(selected_historic_end_newmoonnumber)
export(selected_model)
export(selected_newmoonnumber)
export(selected_species)
export(setup_dir)
export(setup_production)
export(setup_sandbox)
export(species_names_path)
export(subtitle_panel)
export(time_settings)
export(title_panel)
export(update_dir)
export(update_directory_configuration)
export(update_input)
export(update_list)
export(update_output)
export(update_production)
export(update_reactive_values)
export(update_sandbox)
export(write_data)
export(write_datasets_controls)
export(write_directory_configuration)
export(write_models_controls)
export(write_models_scripts)
export(write_models_tab_html)
export(write_rodents_profiles_tab_html)
export(www_path)
export(zip_unzip)
importFrom(arrow,read_csv_arrow)
importFrom(arrow,write_csv_arrow)
importFrom(bslib,bs_theme)
importFrom(coda,HPDinterval)
importFrom(coda,as.mcmc)
importFrom(english,english)
importFrom(forecast,Arima)
importFrom(forecast,auto.arima)
importFrom(forecast,ets)
importFrom(forecast,forecast)
importFrom(forecast,na.interp)
importFrom(git2r,last_commit)
importFrom(grDevices,grey)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(htmltools,HTML)
importFrom(htmltools,a)
importFrom(htmltools,br)
importFrom(htmltools,div)
importFrom(htmltools,h2)
importFrom(htmltools,h3)
importFrom(htmltools,h4)
importFrom(htmltools,includeHTML)
importFrom(htmltools,includeMarkdown)
importFrom(htmltools,p)
importFrom(htmltools,tags)
importFrom(httr,GET)
importFrom(httr,content)
importFrom(httr,stop_for_status)
importFrom(hypergeo,hypergeo)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,serializeJSON)
importFrom(jsonlite,unserializeJSON)
importFrom(jsonlite,write_json)
importFrom(knitr,opts_chunk)
importFrom(markdown,mark)
importFrom(portalr,download_observations)
importFrom(portalr,forecasting_species)
importFrom(portalr,get_future_newmoons)
importFrom(portalr,load_datafile)
importFrom(portalr,na_conformer)
importFrom(portalr,ndvi)
importFrom(portalr,return_if_null)
importFrom(portalr,rodent_species)
importFrom(portalr,summarize_rodent_data)
importFrom(portalr,weather)
importFrom(rmarkdown,knitr_options)
importFrom(rmarkdown,output_format)
importFrom(rmarkdown,pandoc_options)
importFrom(rmarkdown,render)
importFrom(runjags,combine.mcmc)
importFrom(runjags,run.jags)
importFrom(runjags,runjags.options)
importFrom(scoringRules,crps)
importFrom(scoringRules,crps_nbinom)
importFrom(scoringRules,crps_norm)
importFrom(scoringRules,crps_pois)
importFrom(scoringRules,crps_sample)
importFrom(scoringRules,logs)
importFrom(scoringRules,logs_nbinom)
importFrom(scoringRules,logs_norm)
importFrom(scoringRules,logs_pois)
importFrom(scoringRules,logs_sample)
importFrom(shiny,column)
importFrom(shiny,fluidPage)
importFrom(shiny,fluidRow)
importFrom(shiny,getShinyOption)
importFrom(shiny,mainPanel)
importFrom(shiny,observeEvent)
importFrom(shiny,onStop)
importFrom(shiny,plotOutput)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,shinyApp)
importFrom(shiny,shinyOptions)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,textOutput)
importFrom(shiny,titlePanel)
importFrom(shiny,updateSelectInput)
importFrom(stats,AIC)
importFrom(stats,as.ts)
importFrom(stats,filter)
importFrom(stats,frequency)
importFrom(stats,lm)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rgamma)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(tscount,tsglm)
importFrom(utils,download.file)
importFrom(utils,find)
importFrom(utils,globalVariables)
importFrom(utils,help.search)
importFrom(utils,packageDescription)
importFrom(utils,read.csv)
importFrom(utils,sessionInfo)
importFrom(utils,tail)
importFrom(utils,unzip)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(viridis,viridis)
importFrom(yaml,read_yaml)
importFrom(yaml,write_yaml)