DESCRIPTION

Type: Package
Package: curatedTCGAData
Title: Curated Data from The Cancer Genome Atlas (TCGA) as
    MultiAssayExperiment Objects
Version: 1.29.2
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@roswellpark.org",
        c("aut", "cre"), c(ORCID = "0000-0002-3242-0582")),
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", "ctb"),
    person("Lucas", "Schiffer", , "schiffer.lucas@gmail.com", "ctb"),
    person("Ludwig", "Geistlinger", , "ludwig.geistlinger@sph.cuny.edu", "ctb"),
    person("Valerie", "Obenchain", , "valerie.obenchain@roswellpark.org","ctb"),
    person("Martin", "Morgan", , "martin.morgan@roswellpark.org", "ctb")
  )
Description: This package provides publicly available data from The Cancer
    Genome Atlas (TCGA) as MultiAssayExperiment objects.
    MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy
    number, mutation, microRNA, protein, and others) with clinical /
    pathological data.  It also links assay barcodes with patient
    identifiers, enabling harmonized subsetting of rows (features) and
    columns (patients / samples) across the entire multi-'omics
    experiment.
License: Artistic-2.0
BugReports: https://github.com/waldronlab/curatedTCGAData/issues
Depends:
    R (>= 4.5.0),
    MultiAssayExperiment
Imports:
    AnnotationHub,
    ExperimentHub,
    HDF5Array,
    methods,
    S4Vectors,
    stats,
    SummarizedExperiment,
    utils
Suggests:
    BiocStyle,
    knitr,
    RaggedExperiment,
    readr,
    rmarkdown,
    TCGAutils,
    testthat
VignetteBuilder: 
    knitr
biocViews: Homo_sapiens_Data, ReproducibleResearch, CancerData,
    ExperimentHub
Encoding: UTF-8
RoxygenNote: 7.3.2
Date: 2024-11-13