- Thank you for using HMP16SData and citing it in your work : )
- Citations with links for publications added to the primary vignette
- Not much else needs work, happy to take user suggestions though : )
- bioRxiv manuscript was published in the American Journal of Epidemiology
- Updated the CITATION and README.md files with the new publication details
- Added ExperimentHub to biocViews to avoid BiocCheck notes
- Made minor corrections to GitHub bug report and feature request templates
- The package vignette has been significantly expanded to show more analysis
- Attaching dbGaP metadata is quieter and attach_dbGaP checks for existing files
- Internal corrections to function syntax to avoid BiocCheck notes
- Additional files added to GitHub to meet recommended community guidelines
- HMP 16S rRNA sequencing data for variable regions 1–3 and 3–5
- Processed data provided as SummarizedExperiment objects
- A method to attach dbGaP metadata to SummarizedExperiment objects
- A method to coerce SummarizedExperiment objects to phyloseq objects