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ecology.yaml
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ecology.yaml
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---
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: regionalgam_ab_index
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: regionalgam_plot_trend
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: regionalgam_gls_adjusted
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: regionalgam_glmmpql
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: regionalgam_autocor_acf
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: regionalgam_flight_curve
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: regionalgam_gls
owner: ecology
tool_panel_section_label: 'Species abundance'
- name: sample_seqs
owner: peterjc
tool_panel_section_label: 'Filter and Sort'
- name: datamash_ops
owner: iuc
tool_panel_section_label: 'Join, Subtract and Group'
- name: datamash_reverse
owner: iuc
tool_panel_section_label: 'Join, Subtract and Group'
- name: datamash_transpose
owner: iuc
tool_panel_section_label: 'Join, Subtract and Group'
- name: collection_column_join
owner: iuc
tool_panel_section_label: 'Join, Subtract and Group'
- name: numeric_clustering
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: text_processing
owner: bgruening
tool_panel_section_label: 'Text Manipulation'
- name: column_maker
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: prinseq
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: split_file_on_column
owner: bgruening
tool_panel_section_label: 'Text Manipulation'
- name: merge_cols
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: coverage
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: merge
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: intersect
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: join
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: subtract
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: subtract_query
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: unique
owner: bgruening
tool_panel_section_label: 'Text Manipulation'
- name: reshape2_melt
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: reshape2_cast
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: add_value
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: jq
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: tables_arithmetic_operations
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: flanking_features
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: cluster
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: get_flanks
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: complement
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: basecoverage
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: dna_filtering
owner: devteam
tool_panel_section_label: 'Text Manipulation'
- name: column_order_header_sort
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: column_remove_by_header
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: metagenomeseq_normalization
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: gff3_rebase
owner: iuc
tool_panel_section_label: 'Text Manipulation'
- name: column_arrange_by_header
owner: bgruening
tool_panel_section_label: 'Filter and Sort'
- name: seq_filter_by_id
owner: peterjc
tool_panel_section_label: 'Filter and Sort'
- name: transformation
owner: ethevenot
tool_panel_section_label: 'Statistics'
- name: anova
owner: lecorguille
tool_panel_section_label: 'Statistics'
- name: heatmap
owner: ethevenot
tool_panel_section_label: 'Statistics'
- name: univariate
owner: ethevenot
tool_panel_section_label: 'Statistics'
- name: multivariate
owner: ethevenot
tool_panel_section_label: 'Statistics'
- name: biosigner
owner: ethevenot
tool_panel_section_label: 'Statistics'
- name: seq_composition
owner: peterjc
tool_panel_section_label: 'Statistics'
- name: t_test_two_samples
owner: devteam
tool_panel_section_label: 'Statistics'
- name: plot_from_lda
owner: devteam
tool_panel_section_label: 'Statistics'
- name: mine
owner: devteam
tool_panel_section_label: 'Statistics'
- name: lda_analysis
owner: devteam
tool_panel_section_label: 'Statistics'
- name: generate_pc_lda_matrix
owner: devteam
tool_panel_section_label: 'Statistics'
- name: count_gff_features
owner: devteam
tool_panel_section_label: 'Statistics'
- name: correlation
owner: devteam
tool_panel_section_label: 'Statistics'
- name: venn_list
owner: peterjc
tool_panel_section_label: 'Graph/Display Data'
- name: scatterplot
owner: devteam
tool_panel_section_label: 'Graph/Display Data'
- name: histogram
owner: devteam
tool_panel_section_label: 'Graph/Display Data'
- name: gmaj
owner: devteam
tool_panel_section_label: 'Graph/Display Data'
- name: xy_plot
owner: devteam
tool_panel_section_label: 'Graph/Display Data'
- name: draw_stacked_barplots
owner: devteam
tool_panel_section_label: 'Graph/Display Data'
- name: ggplot2_pca
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: pygenometracks
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: ggplot2_heatmap
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: ggplot2_violin
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: ggplot2_heatmap2
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: ggplot2_point
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: ggplot2_histogram
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: tsne
owner: iuc
tool_panel_section_label: 'Graph/Display Data'
- name: best_regression_subsets
owner: devteam
tool_panel_section_label: 'Statistics'
- name: principal_component_analysis
owner: devteam
tool_panel_section_label: 'Statistics'
- name: kernel_principal_component_analysis
owner: devteam
tool_panel_section_label: 'Statistics'
- name: kernel_canonical_correlation_analysis
owner: devteam
tool_panel_section_label: 'Statistics'
- name: canonical_correlation_analysis
owner: devteam
tool_panel_section_label: 'Statistics'
- name: sklearn_svm_classifier
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_sample_generator
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_searchcv
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_build_pipeline
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_pairwise_metrics
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_nn_classifier
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_numeric_clustering
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_ensemble
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_feature_selection
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_data_preprocess
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_clf_metrics
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_regression_metrics
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_discriminant_classifier
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_generalized_linear
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: sklearn_model_validation
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: scipy_sparse
owner: bgruening
tool_panel_section_label: 'Statistics'
- name: regex_find_replace
owner: galaxyp
tool_panel_section_label: 'Text Manipulation'
- name: regex_replace
owner: kellrott
tool_panel_section_label: 'Text Manipulation'
- name: fastq_groomer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastqc
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: multiqc
owner: iuc
tool_panel_section_label: 'Quality Control'
- name: mothur_sffinfo
owner: iuc
tool_panel_section_label: 'Mothur'
- name: fastq_combiner
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: bwa
owner: devteam
tool_panel_section_label: 'RAD-seq'
- name: stacks_ustacks
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_cstacks
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_sstacks
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_pstacks
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_genotypes
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_populations
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_sstacks
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_rxstacks
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_procrad
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_refmap
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_clonefilter
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_assembleperead
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: stacks_stats
owner: iuc
tool_panel_section_label: 'RAD-seq'
- name: gdal_gdaladdo
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_gdalbuildvrt
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_gdalinfo
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_gdal_merge
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_gdal_translate
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_gdalwarp
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_ogr2ogr
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: gdal_ogrinfo
owner: ecology
tool_panel_section_label: 'GIS Data Handling'
- name: spocc_occ
owner: ecology
tool_panel_section_label: 'Get Data'
- name: dwt_var_perfeature
owner: devteam
tool_panel_section_label: 'Statistics'
- name: vigiechiro_bilanenrichipf
owner: ecology
tool_panel_section_label: 'Animal Detection on Acoustic Recordings'
- name: vigiechiro_bilanenrichirp
owner: ecology
tool_panel_section_label: 'Animal Detection on Acoustic Recordings'
- name: vigiechiro_idcorrect_2ndlayer
owner: ecology
tool_panel_section_label: 'Animal Detection on Acoustic Recordings'
- name: vigiechiro_idvalid
owner: ecology
tool_panel_section_label: 'Animal Detection on Acoustic Recordings'