diff --git a/.openapi-generator-ignore b/.openapi-generator-ignore
index 7484ee5..96a94c5 100644
--- a/.openapi-generator-ignore
+++ b/.openapi-generator-ignore
@@ -1,23 +1,11 @@
# OpenAPI Generator Ignore
# Generated by openapi-generator https://github.com/openapitools/openapi-generator
-# Use this file to prevent files from being overwritten by the generator.
-# The patterns follow closely to .gitignore or .dockerignore.
-
-# As an example, the C# client generator defines ApiClient.cs.
-# You can make changes and tell OpenAPI Generator to ignore just this file by uncommenting the following line:
-#ApiClient.cs
-
-# You can match any string of characters against a directory, file or extension with a single asterisk (*):
-#foo/*/qux
-# The above matches foo/bar/qux and foo/baz/qux, but not foo/bar/baz/qux
-
-# You can recursively match patterns against a directory, file or extension with a double asterisk (**):
-#foo/**/qux
-# This matches foo/bar/qux, foo/baz/qux, and foo/bar/baz/qux
-
-# You can also negate patterns with an exclamation (!).
-# For example, you can ignore all files in a docs folder with the file extension .md:
-#docs/*.md
-# Then explicitly reverse the ignore rule for a single file:
-#!docs/README.md
+git_push.sh
+requirements.txt
+setup.cfg
+setup.py
+test-requirements.txt
+.gitlab-ci.yml
+.travis.yml
+pyproject.toml
diff --git a/example_latest.ipynb b/example_latest.ipynb
new file mode 100644
index 0000000..e047e3d
--- /dev/null
+++ b/example_latest.ipynb
@@ -0,0 +1,213 @@
+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "source": [
+ "from vcell_api_client.api_client import ApiClient, Configuration\n",
+ "from vcell_api_client.auth.auth_utils import login_interactive\n",
+ "from vcell_api_client import Publication\n",
+ "from vcell_api_client.api.publication_resource_api import PublicationResourceApi"
+ ],
+ "metadata": {
+ "collapsed": false,
+ "ExecuteTime": {
+ "end_time": "2024-05-30T18:11:43.313995Z",
+ "start_time": "2024-05-30T18:11:43.309359Z"
+ }
+ },
+ "id": "5e183b4a68315dfe",
+ "outputs": [],
+ "execution_count": 2
+ },
+ {
+ "cell_type": "markdown",
+ "source": [
+ "# VCell API Client usage\n",
+ "1. as a public user (no authentication)\n",
+ "2. as an authenticated user (with authentication)"
+ ],
+ "metadata": {
+ "collapsed": false
+ },
+ "id": "d11f5830839dbfb4"
+ },
+ {
+ "cell_type": "markdown",
+ "source": [
+ "## 1) Create anonymous API Client - access to public resources"
+ ],
+ "metadata": {
+ "collapsed": false
+ },
+ "id": "524d1696c6c50b83"
+ },
+ {
+ "cell_type": "code",
+ "source": [
+ "api_url: str = \"https://vcell-dev.cam.uchc.edu\" # vcell base url\n",
+ "\n",
+ "public_client = ApiClient(configuration=Configuration(host=api_url))"
+ ],
+ "metadata": {
+ "collapsed": false,
+ "ExecuteTime": {
+ "end_time": "2024-05-30T18:11:46.721743Z",
+ "start_time": "2024-05-30T18:11:46.718117Z"
+ }
+ },
+ "id": "902c6d3a8dc70af",
+ "outputs": [],
+ "execution_count": 3
+ },
+ {
+ "cell_type": "markdown",
+ "source": [
+ "### Test Publication API - without authentication\n",
+ "1. get publications - doesn't need authentication/authorization"
+ ],
+ "metadata": {
+ "collapsed": false
+ },
+ "id": "b12dfb281d589869"
+ },
+ {
+ "cell_type": "code",
+ "source": [
+ "public_publication_api = PublicationResourceApi(public_client)\n",
+ "pubs: list[Publication] = public_publication_api.get_publications()\n",
+ "display(pubs[0])"
+ ],
+ "metadata": {
+ "collapsed": false,
+ "ExecuteTime": {
+ "end_time": "2024-05-30T18:11:50.556705Z",
+ "start_time": "2024-05-30T18:11:50.274764Z"
+ }
+ },
+ "id": "9ba5b1ac2df17231",
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "Publication(pub_key=270069811, title='K+ and pH homeostasis in plant cells is controlled by a synchronized K+ /H+ antiport at the plasma and vacuolar membrane', authors=['Li, K.', 'Grauschopf, C.', 'Hedrich, R.', 'Dreyer, I.', 'Konrad, K. R.'], year=2024, citation='New Phytol . 2024 Feb;241(4):1525-1542', pubmedid='38017688', doi='10.1111/nph.19436', endnoteid=None, url=None, wittid=-1, biomodel_refs=[BiomodelRef(bm_key=270051643, name='Li_et_al_2024_NewPhytol_Guard_Cell_Homeostats', owner_name='idreyer', owner_key=97134174, version_flag=3)], mathmodel_refs=[], var_date=datetime.date(2023, 11, 28))"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "execution_count": 4
+ },
+ {
+ "cell_type": "markdown",
+ "source": [
+ "## 2) invoke VCell API as an authenticated user\n",
+ "This will open a browser window to login into VCell using Auth0. After login, the browser will redirect to the VCell webapp '/success_login'. `api_client` will be authenticated for VCell API requests. "
+ ],
+ "metadata": {
+ "collapsed": false
+ },
+ "id": "6444e342beaccd4d"
+ },
+ {
+ "cell_type": "code",
+ "id": "f56d96abf59682dd",
+ "metadata": {
+ "collapsed": false,
+ "ExecuteTime": {
+ "end_time": "2024-05-30T18:12:01.401238Z",
+ "start_time": "2024-05-30T18:11:54.267319Z"
+ }
+ },
+ "source": [
+ "client_id: str = 'cjoWhd7W8A8znf7Z7vizyvKJCiqTgRtf' # default client id for standalone VCell clients\n",
+ "issuer_url: str = 'https://dev-dzhx7i2db3x3kkvq.us.auth0.com' # Auth0 issuer url for VCell\n",
+ "\n",
+ "authenticated_client = login_interactive(api_base_url=api_url, client_id=client_id, issuer_url=issuer_url)\n",
+ "display(\"may loose focus to the browser window for login, switch back to this notebook after login.\")"
+ ],
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "'may loose focus to the browser window for login, switch back to this notebook after login.'"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "execution_count": 5
+ },
+ {
+ "cell_type": "markdown",
+ "id": "a0e558b807038809",
+ "metadata": {
+ "collapsed": false
+ },
+ "source": [
+ "### Test Publication API\n",
+ "1. get publications - also doesn't need authentication/authorization"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "id": "8f95b36e4437ccbb",
+ "metadata": {
+ "collapsed": false,
+ "ExecuteTime": {
+ "end_time": "2024-05-30T18:12:07.915716Z",
+ "start_time": "2024-05-30T18:12:07.748765Z"
+ }
+ },
+ "source": [
+ "publication_api = PublicationResourceApi(authenticated_client)\n",
+ "pubs: list[Publication] = publication_api.get_publications()\n",
+ "display(pubs[0])"
+ ],
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "Publication(pub_key=270069811, title='K+ and pH homeostasis in plant cells is controlled by a synchronized K+ /H+ antiport at the plasma and vacuolar membrane', authors=['Li, K.', 'Grauschopf, C.', 'Hedrich, R.', 'Dreyer, I.', 'Konrad, K. R.'], year=2024, citation='New Phytol . 2024 Feb;241(4):1525-1542', pubmedid='38017688', doi='10.1111/nph.19436', endnoteid=None, url=None, wittid=-1, biomodel_refs=[BiomodelRef(bm_key=270051643, name='Li_et_al_2024_NewPhytol_Guard_Cell_Homeostats', owner_name='idreyer', owner_key=97134174, version_flag=3)], mathmodel_refs=[], var_date=datetime.date(2023, 11, 28))"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "execution_count": 6
+ },
+ {
+ "cell_type": "code",
+ "id": "ed266f9194abb748",
+ "metadata": {
+ "collapsed": false
+ },
+ "source": [],
+ "outputs": [],
+ "execution_count": null
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.12.2"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/poetry.lock b/poetry.lock
index 1be7639..1cf3e9d 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -11,6 +11,28 @@ files = [
{file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
+[[package]]
+name = "anyio"
+version = "4.4.0"
+description = "High level compatibility layer for multiple asynchronous event loop implementations"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"},
+ {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"},
+]
+
+[package.dependencies]
+exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
+idna = ">=2.8"
+sniffio = ">=1.1"
+typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
+
+[package.extras]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+trio = ["trio (>=0.23)"]
+
[[package]]
name = "appdirs"
version = "1.4.4"
@@ -22,6 +44,125 @@ files = [
{file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
]
+[[package]]
+name = "appnope"
+version = "0.1.4"
+description = "Disable App Nap on macOS >= 10.9"
+optional = false
+python-versions = ">=3.6"
+files = [
+ {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"},
+ {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"},
+]
+
+[[package]]
+name = "argon2-cffi"
+version = "23.1.0"
+description = "Argon2 for Python"
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"},
+ {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"},
+]
+
+[package.dependencies]
+argon2-cffi-bindings = "*"
+
+[package.extras]
+dev = ["argon2-cffi[tests,typing]", "tox (>4)"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-copybutton", "sphinx-notfound-page"]
+tests = ["hypothesis", "pytest"]
+typing = ["mypy"]
+
+[[package]]
+name = "argon2-cffi-bindings"
+version = "21.2.0"
+description = "Low-level CFFI bindings for Argon2"
+optional = false
+python-versions = ">=3.6"
+files = [
+ {file = "argon2-cffi-bindings-21.2.0.tar.gz", hash = "sha256:bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3"},
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+ {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ed2937d286e2ad0cc79a7087d3c272832865f779430e0cc2b4f3718d3159b0cb"},
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+]
+
+[package.dependencies]
+cffi = ">=1.0.1"
+
+[package.extras]
+dev = ["cogapp", "pre-commit", "pytest", "wheel"]
+tests = ["pytest"]
+
+[[package]]
+name = "arrow"
+version = "1.3.0"
+description = "Better dates & times for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
+ {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
+]
+
+[package.dependencies]
+python-dateutil = ">=2.7.0"
+types-python-dateutil = ">=2.8.10"
+
+[package.extras]
+doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
+
+[[package]]
+name = "asttokens"
+version = "2.4.1"
+description = "Annotate AST trees with source code positions"
+optional = false
+python-versions = "*"
+files = [
+ {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"},
+ {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"},
+]
+
+[package.dependencies]
+six = ">=1.12.0"
+
+[package.extras]
+astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
+test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
+
+[[package]]
+name = "async-lru"
+version = "2.0.4"
+description = "Simple LRU cache for asyncio"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "async-lru-2.0.4.tar.gz", hash = "sha256:b8a59a5df60805ff63220b2a0c5b5393da5521b113cd5465a44eb037d81a5627"},
+ {file = "async_lru-2.0.4-py3-none-any.whl", hash = "sha256:ff02944ce3c288c5be660c42dbcca0742b32c3b279d6dceda655190240b99224"},
+]
+
+[package.dependencies]
+typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
+
[[package]]
name = "atomicwrites"
version = "1.4.1"
@@ -36,7 +177,7 @@ files = [
name = "attrs"
version = "23.2.0"
description = "Classes Without Boilerplate"
-optional = true
+optional = false
python-versions = ">=3.7"
files = [
{file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
@@ -51,6 +192,20 @@ tests = ["attrs[tests-no-zope]", "zope-interface"]
tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
+[[package]]
+name = "babel"
+version = "2.15.0"
+description = "Internationalization utilities"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
+ {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
+]
+
+[package.extras]
+dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
+
[[package]]
name = "backports-tarfile"
version = "1.2.0"
@@ -66,6 +221,41 @@ files = [
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testing = ["jaraco.test", "pytest (!=8.0.*)", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)"]
+[[package]]
+name = "beautifulsoup4"
+version = "4.12.3"
+description = "Screen-scraping library"
+optional = false
+python-versions = ">=3.6.0"
+files = [
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+ {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
+]
+
+[package.dependencies]
+soupsieve = ">1.2"
+
+[package.extras]
+cchardet = ["cchardet"]
+chardet = ["chardet"]
+charset-normalizer = ["charset-normalizer"]
+html5lib = ["html5lib"]
+lxml = ["lxml"]
+
+[[package]]
+name = "binapy"
+version = "0.8.0"
+description = "Binary Data manipulation, for humans."
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+typing-extensions = ">=4.3.0"
+
[[package]]
name = "black"
version = "21.6b0"
@@ -91,6 +281,24 @@ d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"]
python2 = ["typed-ast (>=1.4.2)"]
uvloop = ["uvloop (>=0.15.2)"]
+[[package]]
+name = "bleach"
+version = "6.1.0"
+description = "An easy safelist-based HTML-sanitizing tool."
+optional = false
+python-versions = ">=3.8"
+files = [
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+
+[package.dependencies]
+six = ">=1.9.0"
+webencodings = "*"
+
+[package.extras]
+css = ["tinycss2 (>=1.1.0,<1.3)"]
+
[[package]]
name = "bump2version"
version = "1.0.1"
@@ -106,7 +314,7 @@ files = [
name = "certifi"
version = "2024.2.2"
description = "Python package for providing Mozilla's CA Bundle."
-optional = true
+optional = false
python-versions = ">=3.6"
files = [
{file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
@@ -117,7 +325,7 @@ files = [
name = "cffi"
version = "1.16.0"
description = "Foreign Function Interface for Python calling C code."
-optional = true
+optional = false
python-versions = ">=3.8"
files = [
{file = "cffi-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:6b3d6606d369fc1da4fd8c357d026317fbb9c9b75d36dc16e90e84c26854b088"},
@@ -192,7 +400,7 @@ files = [
name = "charset-normalizer"
version = "3.3.2"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-optional = true
+optional = false
python-versions = ">=3.7.0"
files = [
{file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"},
@@ -305,13 +513,30 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
name = "colorama"
version = "0.4.6"
description = "Cross-platform colored terminal text."
-optional = true
+optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
files = [
{file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
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]
+[[package]]
+name = "comm"
+version = "0.2.2"
+description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
+optional = false
+python-versions = ">=3.8"
+files = [
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+ {file = "comm-0.2.2.tar.gz", hash = "sha256:3fd7a84065306e07bea1773df6eb8282de51ba82f77c72f9c85716ab11fe980e"},
+]
+
+[package.dependencies]
+traitlets = ">=4"
+
+[package.extras]
+test = ["pytest"]
+
[[package]]
name = "coverage"
version = "7.5.3"
@@ -380,7 +605,7 @@ toml = ["tomli"]
name = "cryptography"
version = "42.0.7"
description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
-optional = true
+optional = false
python-versions = ">=3.7"
files = [
{file = "cryptography-42.0.7-cp37-abi3-macosx_10_12_universal2.whl", hash = "sha256:a987f840718078212fdf4504d0fd4c6effe34a7e4740378e59d47696e8dfb477"},
@@ -430,6 +655,59 @@ ssh = ["bcrypt (>=3.1.5)"]
test = ["certifi", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-xdist"]
test-randomorder = ["pytest-randomly"]
+[[package]]
+name = "debugpy"
+version = "1.8.1"
+description = "An implementation of the Debug Adapter Protocol for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
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+ {file = "debugpy-1.8.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:dda73bf69ea479c8577a0448f8c707691152e6c4de7f0c4dec5a4bc11dee516e"},
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+ {file = "debugpy-1.8.1.zip", hash = "sha256:f696d6be15be87aef621917585f9bb94b1dc9e8aced570db1b8a6fc14e8f9b42"},
+]
+
+[[package]]
+name = "decorator"
+version = "5.1.1"
+description = "Decorators for Humans"
+optional = false
+python-versions = ">=3.5"
+files = [
+ {file = "decorator-5.1.1-py3-none-any.whl", hash = "sha256:b8c3f85900b9dc423225913c5aace94729fe1fa9763b38939a95226f02d37186"},
+ {file = "decorator-5.1.1.tar.gz", hash = "sha256:637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330"},
+]
+
+[[package]]
+name = "defusedxml"
+version = "0.7.1"
+description = "XML bomb protection for Python stdlib modules"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+files = [
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+ {file = "defusedxml-0.7.1.tar.gz", hash = "sha256:1bb3032db185915b62d7c6209c5a8792be6a32ab2fedacc84e01b52c51aa3e69"},
+]
+
[[package]]
name = "distlib"
version = "0.3.8"
@@ -452,6 +730,48 @@ files = [
{file = "docutils-0.21.2.tar.gz", hash = "sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f"},
]
+[[package]]
+name = "exceptiongroup"
+version = "1.2.1"
+description = "Backport of PEP 654 (exception groups)"
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "exceptiongroup-1.2.1-py3-none-any.whl", hash = "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad"},
+ {file = "exceptiongroup-1.2.1.tar.gz", hash = "sha256:a4785e48b045528f5bfe627b6ad554ff32def154f42372786903b7abcfe1aa16"},
+]
+
+[package.extras]
+test = ["pytest (>=6)"]
+
+[[package]]
+name = "executing"
+version = "2.0.1"
+description = "Get the currently executing AST node of a frame, and other information"
+optional = false
+python-versions = ">=3.5"
+files = [
+ {file = "executing-2.0.1-py2.py3-none-any.whl", hash = "sha256:eac49ca94516ccc753f9fb5ce82603156e590b27525a8bc32cce8ae302eb61bc"},
+ {file = "executing-2.0.1.tar.gz", hash = "sha256:35afe2ce3affba8ee97f2d69927fa823b08b472b7b994e36a52a964b93d16147"},
+]
+
+[package.extras]
+tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich"]
+
+[[package]]
+name = "fastjsonschema"
+version = "2.19.1"
+description = "Fastest Python implementation of JSON schema"
+optional = false
+python-versions = "*"
+files = [
+ {file = "fastjsonschema-2.19.1-py3-none-any.whl", hash = "sha256:3672b47bc94178c9f23dbb654bf47440155d4db9df5f7bc47643315f9c405cd0"},
+ {file = "fastjsonschema-2.19.1.tar.gz", hash = "sha256:e3126a94bdc4623d3de4485f8d468a12f02a67921315ddc87836d6e456dc789d"},
+]
+
+[package.extras]
+devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
+
[[package]]
name = "filelock"
version = "3.14.0"
@@ -499,6 +819,32 @@ files = [
flake8 = ">=3"
pydocstyle = ">=2.1"
+[[package]]
+name = "fqdn"
+version = "1.5.1"
+description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
+optional = false
+python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
+files = [
+ {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"},
+ {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
+]
+
+[[package]]
+name = "furl"
+version = "2.1.3"
+description = "URL manipulation made simple."
+optional = false
+python-versions = "*"
+files = [
+ {file = "furl-2.1.3-py2.py3-none-any.whl", hash = "sha256:9ab425062c4217f9802508e45feb4a83e54324273ac4b202f1850363309666c0"},
+ {file = "furl-2.1.3.tar.gz", hash = "sha256:5a6188fe2666c484a12159c18be97a1977a71d632ef5bb867ef15f54af39cc4e"},
+]
+
+[package.dependencies]
+orderedmultidict = ">=1.0.1"
+six = ">=1.8.0"
+
[[package]]
name = "ghp-import"
version = "2.1.0"
@@ -516,6 +862,62 @@ python-dateutil = ">=2.8.1"
[package.extras]
dev = ["flake8", "markdown", "twine", "wheel"]
+[[package]]
+name = "h11"
+version = "0.14.0"
+description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "h11-0.14.0-py3-none-any.whl", hash = "sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761"},
+ {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"},
+]
+
+[[package]]
+name = "httpcore"
+version = "1.0.5"
+description = "A minimal low-level HTTP client."
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "httpcore-1.0.5-py3-none-any.whl", hash = "sha256:421f18bac248b25d310f3cacd198d55b8e6125c107797b609ff9b7a6ba7991b5"},
+ {file = "httpcore-1.0.5.tar.gz", hash = "sha256:34a38e2f9291467ee3b44e89dd52615370e152954ba21721378a87b2960f7a61"},
+]
+
+[package.dependencies]
+certifi = "*"
+h11 = ">=0.13,<0.15"
+
+[package.extras]
+asyncio = ["anyio (>=4.0,<5.0)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (==1.*)"]
+trio = ["trio (>=0.22.0,<0.26.0)"]
+
+[[package]]
+name = "httpx"
+version = "0.27.0"
+description = "The next generation HTTP client."
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "httpx-0.27.0-py3-none-any.whl", hash = "sha256:71d5465162c13681bff01ad59b2cc68dd838ea1f10e51574bac27103f00c91a5"},
+ {file = "httpx-0.27.0.tar.gz", hash = "sha256:a0cb88a46f32dc874e04ee956e4c2764aba2aa228f650b06788ba6bda2962ab5"},
+]
+
+[package.dependencies]
+anyio = "*"
+certifi = "*"
+httpcore = "==1.*"
+idna = "*"
+sniffio = "*"
+
+[package.extras]
+brotli = ["brotli", "brotlicffi"]
+cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (==1.*)"]
+
[[package]]
name = "identify"
version = "2.5.36"
@@ -534,7 +936,7 @@ license = ["ukkonen"]
name = "idna"
version = "3.7"
description = "Internationalized Domain Names in Applications (IDNA)"
-optional = true
+optional = false
python-versions = ">=3.5"
files = [
{file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
@@ -545,7 +947,7 @@ files = [
name = "importlib-metadata"
version = "7.1.0"
description = "Read metadata from Python packages"
-optional = true
+optional = false
python-versions = ">=3.8"
files = [
{file = "importlib_metadata-7.1.0-py3-none-any.whl", hash = "sha256:30962b96c0c223483ed6cc7280e7f0199feb01a0e40cfae4d4450fc6fab1f570"},
@@ -571,6 +973,111 @@ files = [
{file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
]
+[[package]]
+name = "ipykernel"
+version = "6.29.4"
+description = "IPython Kernel for Jupyter"
+optional = false
+python-versions = ">=3.8"
+files = [
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+ {file = "ipykernel-6.29.4.tar.gz", hash = "sha256:3d44070060f9475ac2092b760123fadf105d2e2493c24848b6691a7c4f42af5c"},
+]
+
+[package.dependencies]
+appnope = {version = "*", markers = "platform_system == \"Darwin\""}
+comm = ">=0.1.1"
+debugpy = ">=1.6.5"
+ipython = ">=7.23.1"
+jupyter-client = ">=6.1.12"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
+matplotlib-inline = ">=0.1"
+nest-asyncio = "*"
+packaging = "*"
+psutil = "*"
+pyzmq = ">=24"
+tornado = ">=6.1"
+traitlets = ">=5.4.0"
+
+[package.extras]
+cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"]
+pyqt5 = ["pyqt5"]
+pyside6 = ["pyside6"]
+test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.23.5)", "pytest-cov", "pytest-timeout"]
+
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@@ -639,6 +1146,25 @@ more-itertools = "*"
docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
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+
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@@ -658,7 +1184,7 @@ trio = ["async_generator", "trio"]
name = "jinja2"
version = "3.1.4"
description = "A very fast and expressive template engine."
-optional = true
+optional = false
python-versions = ">=3.7"
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@@ -671,6 +1197,351 @@ MarkupSafe = ">=2.0"
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i18n = ["Babel (>=2.7)"]
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+
+[[package]]
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+python-versions = ">=3.7"
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+description = "A Pythonic implementation of the JOSE / JSON Web Crypto related RFCs (JWS, JWK, JWA, JWT, JWE)"
+optional = false
+python-versions = ">=3.8"
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+cryptography = ">=3.4"
+typing-extensions = ">=4.3"
+
[[package]]
name = "keyring"
version = "25.2.1"
@@ -718,7 +1589,7 @@ testing = ["coverage", "pyyaml"]
name = "markupsafe"
version = "2.1.5"
description = "Safely add untrusted strings to HTML/XML markup."
-optional = true
+optional = false
python-versions = ">=3.7"
files = [
{file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a17a92de5231666cfbe003f0e4b9b3a7ae3afb1ec2845aadc2bacc93ff85febc"},
@@ -783,6 +1654,20 @@ files = [
{file = "MarkupSafe-2.1.5.tar.gz", hash = "sha256:d283d37a890ba4c1ae73ffadf8046435c76e7bc2247bbb63c00bd1a709c6544b"},
]
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+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+traitlets = "*"
+
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name = "mccabe"
version = "0.6.1"
@@ -805,6 +1690,17 @@ files = [
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]
+[[package]]
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+description = "A sane and fast Markdown parser with useful plugins and renderers"
+optional = false
+python-versions = ">=3.7"
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+
[[package]]
name = "mkdocs"
version = "1.6.0"
@@ -994,6 +1890,98 @@ files = [
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]
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+
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+test = ["pep440", "pre-commit", "pytest", "testpath"]
+
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+description = "Patch asyncio to allow nested event loops"
+optional = false
+python-versions = ">=3.5"
+files = [
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+
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name = "nh3"
version = "0.2.17"
@@ -1030,17 +2018,108 @@ files = [
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]
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+python-versions = ">=3.8"
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+docs = ["myst-parser", "nbsphinx", "pydata-sphinx-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"]
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+
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+optional = false
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name = "packaging"
version = "24.0"
description = "Core utilities for Python packages"
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python-versions = ">=3.7"
files = [
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+testing = ["docopt", "pytest"]
+
[[package]]
name = "pathspec"
version = "0.12.1"
@@ -1052,6 +2131,20 @@ files = [
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]
+[[package]]
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+description = "Pexpect allows easy control of interactive console applications."
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+python-versions = "*"
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+
+[package.dependencies]
+ptyprocess = ">=0.5"
+
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name = "pip"
version = "20.3.4"
@@ -1081,7 +2174,7 @@ testing = ["pytest", "pytest-cov", "wheel"]
name = "platformdirs"
version = "4.2.2"
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
-optional = true
+optional = false
python-versions = ">=3.8"
files = [
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@@ -1126,6 +2219,87 @@ nodeenv = ">=0.11.1"
pyyaml = ">=5.1"
virtualenv = ">=20.10.0"
+[[package]]
+name = "prometheus-client"
+version = "0.20.0"
+description = "Python client for the Prometheus monitoring system."
+optional = false
+python-versions = ">=3.8"
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+[package.extras]
+twisted = ["twisted"]
+
+[[package]]
+name = "prompt-toolkit"
+version = "3.0.45"
+description = "Library for building powerful interactive command lines in Python"
+optional = false
+python-versions = ">=3.7.0"
+files = [
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+[package.dependencies]
+wcwidth = "*"
+
+[[package]]
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+version = "5.9.8"
+description = "Cross-platform lib for process and system monitoring in Python."
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+files = [
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+
+[[package]]
+name = "stack-data"
+version = "0.6.3"
+description = "Extract data from python stack frames and tracebacks for informative displays"
+optional = false
+python-versions = "*"
+files = [
+ {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
+ {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"},
+]
+
+[package.dependencies]
+asttokens = ">=2.1.0"
+executing = ">=1.2.0"
+pure-eval = "*"
+
+[package.extras]
+tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
+
+[[package]]
+name = "terminado"
+version = "0.18.1"
+description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"},
+ {file = "terminado-0.18.1.tar.gz", hash = "sha256:de09f2c4b85de4765f7714688fff57d3e75bad1f909b589fde880460c753fd2e"},
+]
+
+[package.dependencies]
+ptyprocess = {version = "*", markers = "os_name != \"nt\""}
+pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
+tornado = ">=6.1.0"
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
+test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
+typing = ["mypy (>=1.6,<2.0)", "traitlets (>=5.11.1)"]
+
+[[package]]
+name = "tinycss2"
+version = "1.3.0"
+description = "A tiny CSS parser"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "tinycss2-1.3.0-py3-none-any.whl", hash = "sha256:54a8dbdffb334d536851be0226030e9505965bb2f30f21a4a82c55fb2a80fae7"},
+ {file = "tinycss2-1.3.0.tar.gz", hash = "sha256:152f9acabd296a8375fbca5b84c961ff95971fcfc32e79550c8df8e29118c54d"},
+]
+
+[package.dependencies]
+webencodings = ">=0.4"
+
+[package.extras]
+doc = ["sphinx", "sphinx_rtd_theme"]
+test = ["pytest", "ruff"]
+
[[package]]
name = "toml"
version = "0.10.2"
@@ -1689,13 +3316,33 @@ files = [
name = "tomli"
version = "2.0.1"
description = "A lil' TOML parser"
-optional = true
+optional = false
python-versions = ">=3.7"
files = [
{file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
{file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
]
+[[package]]
+name = "tornado"
+version = "6.4"
+description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
+optional = false
+python-versions = ">= 3.8"
+files = [
+ {file = "tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0"},
+ {file = "tornado-6.4-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:27787de946a9cffd63ce5814c33f734c627a87072ec7eed71f7fc4417bb16263"},
+ {file = "tornado-6.4-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f7894c581ecdcf91666a0912f18ce5e757213999e183ebfc2c3fdbf4d5bd764e"},
+ {file = "tornado-6.4-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e43bc2e5370a6a8e413e1e1cd0c91bedc5bd62a74a532371042a18ef19e10579"},
+ {file = "tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f0251554cdd50b4b44362f73ad5ba7126fc5b2c2895cc62b14a1c2d7ea32f212"},
+ {file = "tornado-6.4-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:fd03192e287fbd0899dd8f81c6fb9cbbc69194d2074b38f384cb6fa72b80e9c2"},
+ {file = "tornado-6.4-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:88b84956273fbd73420e6d4b8d5ccbe913c65d31351b4c004ae362eba06e1f78"},
+ {file = "tornado-6.4-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:71ddfc23a0e03ef2df1c1397d859868d158c8276a0603b96cf86892bff58149f"},
+ {file = "tornado-6.4-cp38-abi3-win32.whl", hash = "sha256:6f8a6c77900f5ae93d8b4ae1196472d0ccc2775cc1dfdc9e7727889145c45052"},
+ {file = "tornado-6.4-cp38-abi3-win_amd64.whl", hash = "sha256:10aeaa8006333433da48dec9fe417877f8bcc21f48dda8d661ae79da357b2a63"},
+ {file = "tornado-6.4.tar.gz", hash = "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee"},
+]
+
[[package]]
name = "tox"
version = "3.28.0"
@@ -1741,6 +3388,21 @@ notebook = ["ipywidgets (>=6)"]
slack = ["slack-sdk"]
telegram = ["requests"]
+[[package]]
+name = "traitlets"
+version = "5.14.3"
+description = "Traitlets Python configuration system"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
+ {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
+]
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
+
[[package]]
name = "twine"
version = "3.8.0"
@@ -1764,6 +3426,17 @@ rfc3986 = ">=1.4.0"
tqdm = ">=4.14"
urllib3 = ">=1.26.0"
+[[package]]
+name = "types-python-dateutil"
+version = "2.9.0.20240316"
+description = "Typing stubs for python-dateutil"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"},
+ {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"},
+]
+
[[package]]
name = "typing-extensions"
version = "4.12.0"
@@ -1775,6 +3448,20 @@ files = [
{file = "typing_extensions-4.12.0.tar.gz", hash = "sha256:8cbcdc8606ebcb0d95453ad7dc5065e6237b6aa230a31e81d0f440c30fed5fd8"},
]
+[[package]]
+name = "uri-template"
+version = "1.3.0"
+description = "RFC 6570 URI Template Processor"
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
+ {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
+]
+
+[package.extras]
+dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake8-commas", "flake8-comprehensions", "flake8-continuation", "flake8-datetimez", "flake8-docstrings", "flake8-import-order", "flake8-literal", "flake8-modern-annotations", "flake8-noqa", "flake8-pyproject", "flake8-requirements", "flake8-typechecking-import", "flake8-use-fstring", "mypy", "pep8-naming", "types-PyYAML"]
+
[[package]]
name = "urllib3"
version = "2.2.1"
@@ -1856,11 +3543,75 @@ files = [
[package.extras]
watchmedo = ["PyYAML (>=3.10)"]
+[[package]]
+name = "wcwidth"
+version = "0.2.13"
+description = "Measures the displayed width of unicode strings in a terminal"
+optional = false
+python-versions = "*"
+files = [
+ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"},
+ {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"},
+]
+
+[[package]]
+name = "webcolors"
+version = "1.13"
+description = "A library for working with the color formats defined by HTML and CSS."
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "webcolors-1.13-py3-none-any.whl", hash = "sha256:29bc7e8752c0a1bd4a1f03c14d6e6a72e93d82193738fa860cbff59d0fcc11bf"},
+ {file = "webcolors-1.13.tar.gz", hash = "sha256:c225b674c83fa923be93d235330ce0300373d02885cef23238813b0d5668304a"},
+]
+
+[package.extras]
+docs = ["furo", "sphinx", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-notfound-page", "sphinxext-opengraph"]
+tests = ["pytest", "pytest-cov"]
+
+[[package]]
+name = "webencodings"
+version = "0.5.1"
+description = "Character encoding aliases for legacy web content"
+optional = false
+python-versions = "*"
+files = [
+ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"},
+ {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"},
+]
+
+[[package]]
+name = "websocket-client"
+version = "1.8.0"
+description = "WebSocket client for Python with low level API options"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"},
+ {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"},
+]
+
+[package.extras]
+docs = ["Sphinx (>=6.0)", "myst-parser (>=2.0.0)", "sphinx-rtd-theme (>=1.1.0)"]
+optional = ["python-socks", "wsaccel"]
+test = ["websockets"]
+
+[[package]]
+name = "widgetsnbextension"
+version = "4.0.11"
+description = "Jupyter interactive widgets for Jupyter Notebook"
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "widgetsnbextension-4.0.11-py3-none-any.whl", hash = "sha256:55d4d6949d100e0d08b94948a42efc3ed6dfdc0e9468b2c4b128c9a2ce3a7a36"},
+ {file = "widgetsnbextension-4.0.11.tar.gz", hash = "sha256:8b22a8f1910bfd188e596fe7fc05dcbd87e810c8a4ba010bdb3da86637398474"},
+]
+
[[package]]
name = "zipp"
version = "3.19.0"
description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = true
+optional = false
python-versions = ">=3.8"
files = [
{file = "zipp-3.19.0-py3-none-any.whl", hash = "sha256:96dc6ad62f1441bcaccef23b274ec471518daf4fbbc580341204936a5a3dddec"},
@@ -1879,4 +3630,4 @@ test = ["black", "flake8", "flake8-docstrings", "isort", "mypy", "pytest", "pyte
[metadata]
lock-version = "2.0"
python-versions = ">=3.9,<4.0"
-content-hash = "8b1ed3761ebb12dacbd907d7c1071d9df6744d29af75295387261f4860500b35"
+content-hash = "58150c9193fcba2df6f3fba9bc2acfcd8b7a63fa06e2442c275ba4b3cc84deeb"
diff --git a/pyproject.toml b/pyproject.toml
index 0f3d05f..3186f30 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -32,6 +32,9 @@ urllib3 = ">= 1.25.3"
python-dateutil = ">=2.8.2"
pydantic = ">=2"
typing-extensions = ">=4.7.1"
+requests-oauth2client = "^1.5.1"
+jupyter = "^1.0.0"
+
black = { version = "^21.5b2", optional = true}
isort = { version = "^5.8.0", optional = true}
diff --git a/vcell_api_client/auth/__init__.py b/vcell_api_client/auth/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/vcell_api_client/auth/auth_utils.py b/vcell_api_client/auth/auth_utils.py
new file mode 100644
index 0000000..8912c79
--- /dev/null
+++ b/vcell_api_client/auth/auth_utils.py
@@ -0,0 +1,145 @@
+import socket
+import webbrowser
+from contextlib import closing
+from http.server import HTTPServer, BaseHTTPRequestHandler
+from typing import Optional
+from urllib import parse
+
+import requests
+from pydantic import BaseModel, StrictStr
+from requests_oauth2client import OAuth2Client, AuthorizationRequest, AuthorizationResponse, BearerToken
+
+from vcell_api_client.api_client import ApiClient, Configuration
+
+LOGIN_SUCCESS = "/login_success"
+OIDC_TEST_CALLBACK = "/oidc_test_callback"
+WELL_KNOWN_CONFIG_PATH = "/.well-known/openid-configuration"
+
+
+class AuthCodeResponse(BaseModel):
+ access_token: Optional[StrictStr] = None
+ id_token: Optional[StrictStr] = None
+ refresh_token: Optional[StrictStr] = None
+
+
+class OAuthHttpServer(HTTPServer):
+
+ def __init__(self, *args, success_redirect_url: str, **kwargs):
+ HTTPServer.__init__(self, *args, **kwargs)
+ self.authorization_code = ""
+ self.path = ""
+ self.fullpath = ""
+ self.success_redirect_url = success_redirect_url
+
+
+class OAuthHttpHandler(BaseHTTPRequestHandler):
+ def do_GET(self):
+ # redirect to the login_success page
+ success_redirect_url: str = self.server.success_redirect_url
+ self.send_response(303) # Send HTTP 303 response
+ self.send_header("Location", success_redirect_url) # Set the Location header to the redirect URL
+ self.end_headers()
+
+ # # close the window instead of showing the login_success page
+ # self.send_response(200)
+ # self.send_header("Content-Type", "text/html")
+ # self.end_headers()
+ # self.wfile.write("".encode("UTF-8"))
+
+ parsed = parse.urlparse(self.path)
+ qs = parse.parse_qs(parsed.query)
+ self.server.path = parsed.path
+ self.server.authorization_code = qs["code"][0]
+ self.server.fullpath = self.path
+
+ def log_message(self, format, *args):
+ # Override this method to suppress logging
+ return
+
+def find_free_port() -> int:
+ # all ports must be registered as http://localhost:/oidc_test_callback in Auth0 redirect URI.
+ # specific ports (ending with 111) are chosen from dynamic/private port range 49152-65535
+ # to avoid conflicts with other services and be tolerated by firewalls.
+ #
+ # corresponding redirect URI registration in Auth0:
+ # http://localhost:51111/oidc_test_callback,http://localhost:52111/oidc_test_callback,
+ # http://localhost:53111/oidc_test_callback,http://localhost:54111/oidc_test_callback,
+ # http://localhost:55111/oidc_test_callback,http://localhost:56111/oidc_test_callback,
+ # http://localhost:57111/oidc_test_callback,http://localhost:58111/oidc_test_callback,
+ # http://localhost:59111/oidc_test_callback,http://localhost:60111/oidc_test_callback,
+ # http://localhost:61111/oidc_test_callback,http://localhost:62111/oidc_test_callback,
+ # http://localhost:63111/oidc_test_callback,http://localhost:64111/oidc_test_callback,
+ # http://localhost:65111/oidc_test_callback
+ #
+ # selected ports which are registered are 51111, 52111, ... 64111, 65111
+ for port in range(51111, 65112, 1000): # Iterate over the range of ports
+ with closing(socket.socket(socket.AF_INET, socket.SOCK_STREAM)) as s:
+ try:
+ assert(type(s) == socket.socket)
+ s.bind(('', port)) # Try to bind to the port
+ except socket.error as e:
+ continue # If bind fails, this port is not free, so move on to the next one
+ return port # If bind succeeds, this port is free, so return it
+ raise RuntimeError('No free ports found') # If no free port is found in the range
+
+
+def login_interactive_tokens(client_id: str, auth_url: str, token_url: str, jwks_uri: str, success_redirect_url: str) -> AuthCodeResponse:
+ """
+ This function is used to login interactively to the VCell API.
+ It is used for the ApiClient class to set the access token.
+ :param api_base_url: The base URL of the VCell API.
+ :param client_id: The client ID of the VCell API OIDC auth provider.
+ :param auth_url: The auth URL of the VCell API IODC auth provider.
+ :return: An AuthCodeResponse object with access, id and refresh tokens.
+ """
+ hostname = "localhost"
+ temp_http_port = find_free_port()
+
+ with OAuthHttpServer((hostname, temp_http_port), OAuthHttpHandler, success_redirect_url=success_redirect_url) as httpd:
+ redirectURI = f'http://{hostname}:{temp_http_port}{OIDC_TEST_CALLBACK}'
+
+ oauth2client = OAuth2Client(
+ token_endpoint=token_url,
+ authorization_endpoint=auth_url,
+ redirect_uri=redirectURI,
+ client_id=client_id,
+ jwks_uri=jwks_uri
+ )
+
+ authorization_request: AuthorizationRequest = oauth2client.authorization_request(scope="openid email profile offline_access")
+
+ webbrowser.open(url=authorization_request.uri, new=1, autoraise=True)
+
+ httpd.handle_request()
+
+ authorization_response: AuthorizationResponse = authorization_request.validate_callback(httpd.fullpath)
+
+ token: BearerToken = oauth2client.authorization_code(code=authorization_response, validate=False)
+
+ auth_code_response: AuthCodeResponse = AuthCodeResponse(access_token=token.access_token, id_token=str(token.id_token), refresh_token=token.refresh_token)
+ return auth_code_response
+
+
+def get_authorization_and_token_endpoints(issuer_url: str) -> tuple[str, str, str]:
+ response = requests.get(f'{issuer_url}{WELL_KNOWN_CONFIG_PATH}')
+ response.raise_for_status() # Raise an exception if the request was unsuccessful
+ data = response.json()
+ return data.get('authorization_endpoint'), data.get('token_endpoint'), data.get('jwks_uri')
+
+
+def login_interactive(api_base_url: str, client_id: str, issuer_url: str) -> ApiClient:
+ """
+ This function is used to login interactively to the VCell API.
+ It is used for the ApiClient class to set the access token.
+ :param api_base_url: The base URL of the VCell API.
+ :param client_id: The client ID of the VCell API OIDC auth provider.
+ :param issuer_url: The base URL of the VCell API OIDC auth provider.
+ :return: An ApiClient object with the access token set.
+ """
+ auth_url, token_url, jwks_uri = get_authorization_and_token_endpoints(issuer_url)
+ auth_code_response: AuthCodeResponse = login_interactive_tokens(
+ client_id=client_id, auth_url=auth_url, token_url=token_url, jwks_uri=jwks_uri, success_redirect_url=api_base_url + LOGIN_SUCCESS)
+ id_token = auth_code_response.id_token
+ api_client = ApiClient(configuration=Configuration(host=api_base_url, access_token=id_token))
+ api_client.set_default_header('Authorization', f'Bearer {id_token}')
+ return api_client