diff --git a/.github/workflows/python.yml b/.github/workflows/python.yml new file mode 100644 index 0000000..09e6c2d --- /dev/null +++ b/.github/workflows/python.yml @@ -0,0 +1,38 @@ +# NOTE: This file is auto generated by OpenAPI Generator. +# URL: https://openapi-generator.tech +# +# ref: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python + +name: vcell_api_client Python package + +on: [push, pull_request] + +jobs: + build: + + runs-on: ubuntu-latest + strategy: + matrix: + python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] + + steps: + - uses: actions/checkout@v3 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4 + with: + python-version: ${{ matrix.python-version }} + - name: Install dependencies + run: | + python -m pip install --upgrade pip + pip install flake8 pytest + if [ -f requirements.txt ]; then pip install -r requirements.txt; fi + if [ -f test-requirements.txt ]; then pip install -r test-requirements.txt; fi + - name: Lint with flake8 + run: | + # stop the build if there are Python syntax errors or undefined names + flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics + # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide + flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics + - name: Test with pytest + run: | + pytest diff --git a/.gitignore b/.gitignore index 90f0ab1..9670f85 100644 --- a/.gitignore +++ b/.gitignore @@ -50,7 +50,10 @@ nosetests.xml coverage.xml *.cover .hypothesis/ -.pytest_cache/ +venv/ +.venv/ +.python-version +.pytest_cache # Translations *.mo @@ -73,7 +76,7 @@ docs/_build/ # PyBuilder target/ -# Jupyter Notebook +#Ipython Notebook .ipynb_checkpoints # pyenv @@ -112,3 +115,7 @@ ENV/ # mkdocs build dir site/ + +.gitlab-ci.yml + +.travis.yml diff --git a/.openapi-generator-ignore b/.openapi-generator-ignore new file mode 100644 index 0000000..7484ee5 --- /dev/null +++ b/.openapi-generator-ignore @@ -0,0 +1,23 @@ +# OpenAPI Generator Ignore +# Generated by openapi-generator https://github.com/openapitools/openapi-generator + +# Use this file to prevent files from being overwritten by the generator. +# The patterns follow closely to .gitignore or .dockerignore. + +# As an example, the C# client generator defines ApiClient.cs. +# You can make changes and tell OpenAPI Generator to ignore just this file by uncommenting the following line: +#ApiClient.cs + +# You can match any string of characters against a directory, file or extension with a single asterisk (*): +#foo/*/qux +# The above matches foo/bar/qux and foo/baz/qux, but not foo/bar/baz/qux + +# You can recursively match patterns against a directory, file or extension with a double asterisk (**): +#foo/**/qux +# This matches foo/bar/qux, foo/baz/qux, and foo/bar/baz/qux + +# You can also negate patterns with an exclamation (!). +# For example, you can ignore all files in a docs folder with the file extension .md: +#docs/*.md +# Then explicitly reverse the ignore rule for a single file: +#!docs/README.md diff --git a/.openapi-generator/FILES b/.openapi-generator/FILES new file mode 100644 index 0000000..0b33e7e --- /dev/null +++ b/.openapi-generator/FILES @@ -0,0 +1,54 @@ +.github/workflows/python.yml +.gitignore +.gitlab-ci.yml +.travis.yml +README.md +docs/AccesTokenRepresentationRecord.md +docs/AdminResourceApi.md +docs/BioModel.md +docs/BioModelResourceApi.md +docs/BiomodelRef.md +docs/HelloWorldApi.md +docs/HelloWorldMessage.md +docs/Identity.md +docs/MathmodelRef.md +docs/Publication.md +docs/PublicationResourceApi.md +docs/Simulation.md +docs/UserIdentityJSONSafe.md +docs/UserLoginInfoForMapping.md +docs/UserRegistrationInfo.md +docs/UsersResourceApi.md +git_push.sh +pyproject.toml +requirements.txt +setup.cfg +setup.py +test-requirements.txt +test/__init__.py +tox.ini +vcell_api_client/__init__.py +vcell_api_client/api/__init__.py +vcell_api_client/api/admin_resource_api.py +vcell_api_client/api/bio_model_resource_api.py +vcell_api_client/api/hello_world_api.py +vcell_api_client/api/publication_resource_api.py +vcell_api_client/api/users_resource_api.py +vcell_api_client/api_client.py +vcell_api_client/api_response.py +vcell_api_client/configuration.py +vcell_api_client/exceptions.py +vcell_api_client/models/__init__.py +vcell_api_client/models/acces_token_representation_record.py +vcell_api_client/models/bio_model.py +vcell_api_client/models/biomodel_ref.py +vcell_api_client/models/hello_world_message.py +vcell_api_client/models/identity.py +vcell_api_client/models/mathmodel_ref.py +vcell_api_client/models/publication.py +vcell_api_client/models/simulation.py +vcell_api_client/models/user_identity_json_safe.py +vcell_api_client/models/user_login_info_for_mapping.py +vcell_api_client/models/user_registration_info.py +vcell_api_client/py.typed +vcell_api_client/rest.py diff --git a/.openapi-generator/VERSION b/.openapi-generator/VERSION new file mode 100644 index 0000000..3769235 --- /dev/null +++ b/.openapi-generator/VERSION @@ -0,0 +1 @@ +7.1.0 \ No newline at end of file diff --git a/README.md b/README.md index 3896c78..4517fe9 100644 --- a/README.md +++ b/README.md @@ -24,3 +24,143 @@ Client library to connect to VCell remote API ## Credits This package was created with [Cookiecutter](https://github.com/audreyr/cookiecutter) and the [waynerv/cookiecutter-pypackage](https://github.com/waynerv/cookiecutter-pypackage) project template. + +## Background + +This Python package is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project: + +- API version: 1.0.1 +- Package version: 0.1.0 +- Build package: org.openapitools.codegen.languages.PythonClientCodegen +For more information, please visit [http://exampleurl.com/contact](http://exampleurl.com/contact) + +## Requirements. + +Python 3.9+ + +## Installation & Usage +### pip install + +If the python package is hosted on a repository, you can install directly using: + +```sh +pip install git+https://github.com/GIT_USER_ID/GIT_REPO_ID.git +``` +(you may need to run `pip` with root permission: `sudo pip install git+https://github.com/GIT_USER_ID/GIT_REPO_ID.git`) + +Then import the package: +```python +import vcell_api_client +``` + +### Setuptools + +Install via [Setuptools](http://pypi.python.org/pypi/setuptools). + +```sh +python setup.py install --user +``` +(or `sudo python setup.py install` to install the package for all users) + +Then import the package: +```python +import vcell_api_client +``` + +### Tests + +Execute `pytest` to run the tests. + +## Getting Started + +Please follow the [installation procedure](#installation--usage) and then run the following: + +```python + +import time +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.AdminResourceApi(api_client) + + try: + # Get usage summary + api_response = api_instance.get_usage() + print("The response of AdminResourceApi->get_usage:\n") + pprint(api_response) + except ApiException as e: + print("Exception when calling AdminResourceApi->get_usage: %s\n" % e) + +``` + +## Documentation for API Endpoints + +All URIs are relative to *https://vcellapi-test.cam.uchc.edu* + +Class | Method | HTTP request | Description +------------ | ------------- | ------------- | ------------- +*AdminResourceApi* | [**get_usage**](docs/AdminResourceApi.md#get_usage) | **GET** /api/v1/admin/usage | Get usage summary +*BioModelResourceApi* | [**delete_bio_model**](docs/BioModelResourceApi.md#delete_bio_model) | **DELETE** /api/v1/bioModel/{bioModelID} | Delete the BioModel from VCell's database. +*BioModelResourceApi* | [**get_biomodel_by_id**](docs/BioModelResourceApi.md#get_biomodel_by_id) | **GET** /api/v1/bioModel/{bioModelID} | Get BioModel information in JSON format by ID. +*BioModelResourceApi* | [**upload_bio_model**](docs/BioModelResourceApi.md#upload_bio_model) | **POST** /api/v1/bioModel/upload_bioModel | Upload the BioModel to VCell database. Returns BioModel ID. +*HelloWorldApi* | [**get_hello_world**](docs/HelloWorldApi.md#get_hello_world) | **GET** /api/v1/helloworld | Get hello world message. +*PublicationResourceApi* | [**create_publication**](docs/PublicationResourceApi.md#create_publication) | **POST** /api/v1/publications | Create publication +*PublicationResourceApi* | [**delete_publication**](docs/PublicationResourceApi.md#delete_publication) | **DELETE** /api/v1/publications/{id} | Delete publication +*PublicationResourceApi* | [**get_publication_by_id**](docs/PublicationResourceApi.md#get_publication_by_id) | **GET** /api/v1/publications/{id} | Get publication by ID +*PublicationResourceApi* | [**get_publications**](docs/PublicationResourceApi.md#get_publications) | **GET** /api/v1/publications | Get all publications +*PublicationResourceApi* | [**update_publication**](docs/PublicationResourceApi.md#update_publication) | **PUT** /api/v1/publications | Create publication +*UsersResourceApi* | [**forgot_legacy_password**](docs/UsersResourceApi.md#forgot_legacy_password) | **POST** /api/v1/users/forgotLegacyPassword | The end user has forgotten the legacy password they used for VCell, so they will be emailed it. +*UsersResourceApi* | [**get_legacy_api_token**](docs/UsersResourceApi.md#get_legacy_api_token) | **POST** /api/v1/users/bearerToken | Get token for legacy API +*UsersResourceApi* | [**get_mapped_user**](docs/UsersResourceApi.md#get_mapped_user) | **GET** /api/v1/users/mappedUser | Get mapped VCell identity +*UsersResourceApi* | [**get_me**](docs/UsersResourceApi.md#get_me) | **GET** /api/v1/users/me | Get current user +*UsersResourceApi* | [**map_new_user**](docs/UsersResourceApi.md#map_new_user) | **POST** /api/v1/users/newUser | create vcell user +*UsersResourceApi* | [**map_user**](docs/UsersResourceApi.md#map_user) | **POST** /api/v1/users/mapUser | map vcell user +*UsersResourceApi* | [**unmap_user**](docs/UsersResourceApi.md#unmap_user) | **PUT** /api/v1/users/unmapUser/{userName} | remove vcell identity mapping + + +## Documentation For Models + + - [AccesTokenRepresentationRecord](docs/AccesTokenRepresentationRecord.md) + - [BioModel](docs/BioModel.md) + - [BiomodelRef](docs/BiomodelRef.md) + - [HelloWorldMessage](docs/HelloWorldMessage.md) + - [Identity](docs/Identity.md) + - [MathmodelRef](docs/MathmodelRef.md) + - [Publication](docs/Publication.md) + - [Simulation](docs/Simulation.md) + - [UserIdentityJSONSafe](docs/UserIdentityJSONSafe.md) + - [UserLoginInfoForMapping](docs/UserLoginInfoForMapping.md) + - [UserRegistrationInfo](docs/UserRegistrationInfo.md) + + + +## Documentation For Authorization + + +Authentication schemes defined for the API: + +### openId + + + +## Author + +vcell_support@uchc.com + + diff --git a/docs/AccesTokenRepresentationRecord.md b/docs/AccesTokenRepresentationRecord.md new file mode 100644 index 0000000..20e7fd1 --- /dev/null +++ b/docs/AccesTokenRepresentationRecord.md @@ -0,0 +1,32 @@ +# AccesTokenRepresentationRecord + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**token** | **str** | | [optional] +**creation_date_seconds** | **int** | | [optional] +**expire_date_seconds** | **int** | | [optional] +**user_id** | **str** | | [optional] +**user_key** | **str** | | [optional] + +## Example + +```python +from vcell_api_client.models.acces_token_representation_record import AccesTokenRepresentationRecord + +# TODO update the JSON string below +json = "{}" +# create an instance of AccesTokenRepresentationRecord from a JSON string +acces_token_representation_record_instance = AccesTokenRepresentationRecord.from_json(json) +# print the JSON string representation of the object +print AccesTokenRepresentationRecord.to_json() + +# convert the object into a dict +acces_token_representation_record_dict = acces_token_representation_record_instance.to_dict() +# create an instance of AccesTokenRepresentationRecord from a dict +acces_token_representation_record_form_dict = acces_token_representation_record.from_dict(acces_token_representation_record_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/AdminResourceApi.md b/docs/AdminResourceApi.md new file mode 100644 index 0000000..48a1f2a --- /dev/null +++ b/docs/AdminResourceApi.md @@ -0,0 +1,75 @@ +# vcell_api_client.AdminResourceApi + +All URIs are relative to *https://vcellapi-test.cam.uchc.edu* + +Method | HTTP request | Description +------------- | ------------- | ------------- +[**get_usage**](AdminResourceApi.md#get_usage) | **GET** /api/v1/admin/usage | Get usage summary + + +# **get_usage** +> bytearray get_usage() + +Get usage summary + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.AdminResourceApi(api_client) + + try: + # Get usage summary + api_response = api_instance.get_usage() + print("The response of AdminResourceApi->get_usage:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling AdminResourceApi->get_usage: %s\n" % e) +``` + + + +### Parameters +This endpoint does not need any parameter. + +### Return type + +**bytearray** + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/pdf + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | The PDF report | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + diff --git a/docs/BioModel.md b/docs/BioModel.md new file mode 100644 index 0000000..2e38f23 --- /dev/null +++ b/docs/BioModel.md @@ -0,0 +1,39 @@ +# BioModel + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**bm_key** | **str** | | [optional] +**name** | **str** | | [optional] +**privacy** | **int** | | [optional] +**group_users** | **List[str]** | | [optional] +**saved_date** | **int** | | [optional] +**annot** | **str** | | [optional] +**branch_id** | **str** | | [optional] +**phys_model_key** | **str** | | [optional] +**owner_name** | **str** | | [optional] +**owner_key** | **str** | | [optional] +**simulations** | [**List[Simulation]**](Simulation.md) | | [optional] +**applications** | **List[object]** | | [optional] + +## Example + +```python +from vcell_api_client.models.bio_model import BioModel + +# TODO update the JSON string below +json = "{}" +# create an instance of BioModel from a JSON string +bio_model_instance = BioModel.from_json(json) +# print the JSON string representation of the object +print BioModel.to_json() + +# convert the object into a dict +bio_model_dict = bio_model_instance.to_dict() +# create an instance of BioModel from a dict +bio_model_form_dict = bio_model.from_dict(bio_model_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/BioModelResourceApi.md b/docs/BioModelResourceApi.md new file mode 100644 index 0000000..ddf6438 --- /dev/null +++ b/docs/BioModelResourceApi.md @@ -0,0 +1,202 @@ +# vcell_api_client.BioModelResourceApi + +All URIs are relative to *https://vcellapi-test.cam.uchc.edu* + +Method | HTTP request | Description +------------- | ------------- | ------------- +[**delete_bio_model**](BioModelResourceApi.md#delete_bio_model) | **DELETE** /api/v1/bioModel/{bioModelID} | Delete the BioModel from VCell's database. +[**get_biomodel_by_id**](BioModelResourceApi.md#get_biomodel_by_id) | **GET** /api/v1/bioModel/{bioModelID} | Get BioModel information in JSON format by ID. +[**upload_bio_model**](BioModelResourceApi.md#upload_bio_model) | **POST** /api/v1/bioModel/upload_bioModel | Upload the BioModel to VCell database. Returns BioModel ID. + + +# **delete_bio_model** +> delete_bio_model(bio_model_id) + +Delete the BioModel from VCell's database. + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.BioModelResourceApi(api_client) + bio_model_id = 'bio_model_id_example' # str | + + try: + # Delete the BioModel from VCell's database. + api_instance.delete_bio_model(bio_model_id) + except Exception as e: + print("Exception when calling BioModelResourceApi->delete_bio_model: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **bio_model_id** | **str**| | + +### Return type + +void (empty response body) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: Not defined + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**204** | No Content | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **get_biomodel_by_id** +> BioModel get_biomodel_by_id(bio_model_id) + +Get BioModel information in JSON format by ID. + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.bio_model import BioModel +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.BioModelResourceApi(api_client) + bio_model_id = 'bio_model_id_example' # str | + + try: + # Get BioModel information in JSON format by ID. + api_response = api_instance.get_biomodel_by_id(bio_model_id) + print("The response of BioModelResourceApi->get_biomodel_by_id:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling BioModelResourceApi->get_biomodel_by_id: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **bio_model_id** | **str**| | + +### Return type + +[**BioModel**](BioModel.md) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **upload_bio_model** +> str upload_bio_model(body=body) + +Upload the BioModel to VCell database. Returns BioModel ID. + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.BioModelResourceApi(api_client) + body = 'body_example' # str | (optional) + + try: + # Upload the BioModel to VCell database. Returns BioModel ID. + api_response = api_instance.upload_bio_model(body=body) + print("The response of BioModelResourceApi->upload_bio_model:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling BioModelResourceApi->upload_bio_model: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **body** | **str**| | [optional] + +### Return type + +**str** + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: text/xml + - **Accept**: text/plain + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + diff --git a/docs/BiomodelRef.md b/docs/BiomodelRef.md new file mode 100644 index 0000000..d380232 --- /dev/null +++ b/docs/BiomodelRef.md @@ -0,0 +1,32 @@ +# BiomodelRef + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**bm_key** | **int** | | [optional] +**name** | **str** | | [optional] +**owner_name** | **str** | | [optional] +**owner_key** | **int** | | [optional] +**version_flag** | **int** | | [optional] + +## Example + +```python +from vcell_api_client.models.biomodel_ref import BiomodelRef + +# TODO update the JSON string below +json = "{}" +# create an instance of BiomodelRef from a JSON string +biomodel_ref_instance = BiomodelRef.from_json(json) +# print the JSON string representation of the object +print BiomodelRef.to_json() + +# convert the object into a dict +biomodel_ref_dict = biomodel_ref_instance.to_dict() +# create an instance of BiomodelRef from a dict +biomodel_ref_form_dict = biomodel_ref.from_dict(biomodel_ref_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/HelloWorldApi.md b/docs/HelloWorldApi.md new file mode 100644 index 0000000..6c21ddd --- /dev/null +++ b/docs/HelloWorldApi.md @@ -0,0 +1,70 @@ +# vcell_api_client.HelloWorldApi + +All URIs are relative to *https://vcellapi-test.cam.uchc.edu* + +Method | HTTP request | Description +------------- | ------------- | ------------- +[**get_hello_world**](HelloWorldApi.md#get_hello_world) | **GET** /api/v1/helloworld | Get hello world message. + + +# **get_hello_world** +> HelloWorldMessage get_hello_world() + +Get hello world message. + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.hello_world_message import HelloWorldMessage +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.HelloWorldApi(api_client) + + try: + # Get hello world message. + api_response = api_instance.get_hello_world() + print("The response of HelloWorldApi->get_hello_world:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling HelloWorldApi->get_hello_world: %s\n" % e) +``` + + + +### Parameters +This endpoint does not need any parameter. + +### Return type + +[**HelloWorldMessage**](HelloWorldMessage.md) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + diff --git a/docs/HelloWorldMessage.md b/docs/HelloWorldMessage.md new file mode 100644 index 0000000..554c3ba --- /dev/null +++ b/docs/HelloWorldMessage.md @@ -0,0 +1,28 @@ +# HelloWorldMessage + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**message** | **str** | | [optional] + +## Example + +```python +from vcell_api_client.models.hello_world_message import HelloWorldMessage + +# TODO update the JSON string below +json = "{}" +# create an instance of HelloWorldMessage from a JSON string +hello_world_message_instance = HelloWorldMessage.from_json(json) +# print the JSON string representation of the object +print HelloWorldMessage.to_json() + +# convert the object into a dict +hello_world_message_dict = hello_world_message_instance.to_dict() +# create an instance of HelloWorldMessage from a dict +hello_world_message_form_dict = hello_world_message.from_dict(hello_world_message_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/Identity.md b/docs/Identity.md new file mode 100644 index 0000000..5333d63 --- /dev/null +++ b/docs/Identity.md @@ -0,0 +1,31 @@ +# Identity + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**principal_name** | **str** | | [optional] +**roles** | **List[str]** | | [optional] +**attributes** | **List[str]** | | [optional] +**credentials** | **List[str]** | | [optional] + +## Example + +```python +from vcell_api_client.models.identity import Identity + +# TODO update the JSON string below +json = "{}" +# create an instance of Identity from a JSON string +identity_instance = Identity.from_json(json) +# print the JSON string representation of the object +print Identity.to_json() + +# convert the object into a dict +identity_dict = identity_instance.to_dict() +# create an instance of Identity from a dict +identity_form_dict = identity.from_dict(identity_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/MathmodelRef.md b/docs/MathmodelRef.md new file mode 100644 index 0000000..10a58c7 --- /dev/null +++ b/docs/MathmodelRef.md @@ -0,0 +1,32 @@ +# MathmodelRef + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**mm_key** | **int** | | [optional] +**name** | **str** | | [optional] +**owner_name** | **str** | | [optional] +**owner_key** | **int** | | [optional] +**version_flag** | **int** | | [optional] + +## Example + +```python +from vcell_api_client.models.mathmodel_ref import MathmodelRef + +# TODO update the JSON string below +json = "{}" +# create an instance of MathmodelRef from a JSON string +mathmodel_ref_instance = MathmodelRef.from_json(json) +# print the JSON string representation of the object +print MathmodelRef.to_json() + +# convert the object into a dict +mathmodel_ref_dict = mathmodel_ref_instance.to_dict() +# create an instance of MathmodelRef from a dict +mathmodel_ref_form_dict = mathmodel_ref.from_dict(mathmodel_ref_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/Publication.md b/docs/Publication.md new file mode 100644 index 0000000..dfed627 --- /dev/null +++ b/docs/Publication.md @@ -0,0 +1,40 @@ +# Publication + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**pub_key** | **int** | | [optional] +**title** | **str** | | [optional] +**authors** | **List[str]** | | [optional] +**year** | **int** | | [optional] +**citation** | **str** | | [optional] +**pubmedid** | **str** | | [optional] +**doi** | **str** | | [optional] +**endnoteid** | **int** | | [optional] +**url** | **str** | | [optional] +**wittid** | **int** | | [optional] +**biomodel_refs** | [**List[BiomodelRef]**](BiomodelRef.md) | | [optional] +**mathmodel_refs** | [**List[MathmodelRef]**](MathmodelRef.md) | | [optional] +**var_date** | **date** | | [optional] + +## Example + +```python +from vcell_api_client.models.publication import Publication + +# TODO update the JSON string below +json = "{}" +# create an instance of Publication from a JSON string +publication_instance = Publication.from_json(json) +# print the JSON string representation of the object +print Publication.to_json() + +# convert the object into a dict +publication_dict = publication_instance.to_dict() +# create an instance of Publication from a dict +publication_form_dict = publication.from_dict(publication_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/PublicationResourceApi.md b/docs/PublicationResourceApi.md new file mode 100644 index 0000000..637c22a --- /dev/null +++ b/docs/PublicationResourceApi.md @@ -0,0 +1,349 @@ +# vcell_api_client.PublicationResourceApi + +All URIs are relative to *https://vcellapi-test.cam.uchc.edu* + +Method | HTTP request | Description +------------- | ------------- | ------------- +[**create_publication**](PublicationResourceApi.md#create_publication) | **POST** /api/v1/publications | Create publication +[**delete_publication**](PublicationResourceApi.md#delete_publication) | **DELETE** /api/v1/publications/{id} | Delete publication +[**get_publication_by_id**](PublicationResourceApi.md#get_publication_by_id) | **GET** /api/v1/publications/{id} | Get publication by ID +[**get_publications**](PublicationResourceApi.md#get_publications) | **GET** /api/v1/publications | Get all publications +[**update_publication**](PublicationResourceApi.md#update_publication) | **PUT** /api/v1/publications | Create publication + + +# **create_publication** +> int create_publication(publication=publication) + +Create publication + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.publication import Publication +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.PublicationResourceApi(api_client) + publication = vcell_api_client.Publication() # Publication | (optional) + + try: + # Create publication + api_response = api_instance.create_publication(publication=publication) + print("The response of PublicationResourceApi->create_publication:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling PublicationResourceApi->create_publication: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **publication** | [**Publication**](Publication.md)| | [optional] + +### Return type + +**int** + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: application/json + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **delete_publication** +> delete_publication(id) + +Delete publication + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.PublicationResourceApi(api_client) + id = 56 # int | + + try: + # Delete publication + api_instance.delete_publication(id) + except Exception as e: + print("Exception when calling PublicationResourceApi->delete_publication: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **id** | **int**| | + +### Return type + +void (empty response body) + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: Not defined + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**204** | No Content | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **get_publication_by_id** +> Publication get_publication_by_id(id) + +Get publication by ID + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.publication import Publication +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.PublicationResourceApi(api_client) + id = 56 # int | + + try: + # Get publication by ID + api_response = api_instance.get_publication_by_id(id) + print("The response of PublicationResourceApi->get_publication_by_id:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling PublicationResourceApi->get_publication_by_id: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **id** | **int**| | + +### Return type + +[**Publication**](Publication.md) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **get_publications** +> List[Publication] get_publications() + +Get all publications + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.publication import Publication +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.PublicationResourceApi(api_client) + + try: + # Get all publications + api_response = api_instance.get_publications() + print("The response of PublicationResourceApi->get_publications:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling PublicationResourceApi->get_publications: %s\n" % e) +``` + + + +### Parameters +This endpoint does not need any parameter. + +### Return type + +[**List[Publication]**](Publication.md) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **update_publication** +> Publication update_publication(publication=publication) + +Create publication + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.publication import Publication +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.PublicationResourceApi(api_client) + publication = vcell_api_client.Publication() # Publication | (optional) + + try: + # Create publication + api_response = api_instance.update_publication(publication=publication) + print("The response of PublicationResourceApi->update_publication:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling PublicationResourceApi->update_publication: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **publication** | [**Publication**](Publication.md)| | [optional] + +### Return type + +[**Publication**](Publication.md) + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: application/json + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + diff --git a/docs/Simulation.md b/docs/Simulation.md new file mode 100644 index 0000000..86c57ab --- /dev/null +++ b/docs/Simulation.md @@ -0,0 +1,28 @@ +# Simulation + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**name** | **str** | | [optional] + +## Example + +```python +from vcell_api_client.models.simulation import Simulation + +# TODO update the JSON string below +json = "{}" +# create an instance of Simulation from a JSON string +simulation_instance = Simulation.from_json(json) +# print the JSON string representation of the object +print Simulation.to_json() + +# convert the object into a dict +simulation_dict = simulation_instance.to_dict() +# create an instance of Simulation from a dict +simulation_form_dict = simulation.from_dict(simulation_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/UserIdentityJSONSafe.md b/docs/UserIdentityJSONSafe.md new file mode 100644 index 0000000..8750d24 --- /dev/null +++ b/docs/UserIdentityJSONSafe.md @@ -0,0 +1,31 @@ +# UserIdentityJSONSafe + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**user_name** | **str** | | [optional] +**id** | **float** | | [optional] +**subject** | **str** | | [optional] +**insert_date** | **str** | | [optional] + +## Example + +```python +from vcell_api_client.models.user_identity_json_safe import UserIdentityJSONSafe + +# TODO update the JSON string below +json = "{}" +# create an instance of UserIdentityJSONSafe from a JSON string +user_identity_json_safe_instance = UserIdentityJSONSafe.from_json(json) +# print the JSON string representation of the object +print UserIdentityJSONSafe.to_json() + +# convert the object into a dict +user_identity_json_safe_dict = user_identity_json_safe_instance.to_dict() +# create an instance of UserIdentityJSONSafe from a dict +user_identity_json_safe_form_dict = user_identity_json_safe.from_dict(user_identity_json_safe_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/UserLoginInfoForMapping.md b/docs/UserLoginInfoForMapping.md new file mode 100644 index 0000000..f3019cc --- /dev/null +++ b/docs/UserLoginInfoForMapping.md @@ -0,0 +1,29 @@ +# UserLoginInfoForMapping + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**user_id** | **str** | | [optional] +**password** | **str** | | [optional] + +## Example + +```python +from vcell_api_client.models.user_login_info_for_mapping import UserLoginInfoForMapping + +# TODO update the JSON string below +json = "{}" +# create an instance of UserLoginInfoForMapping from a JSON string +user_login_info_for_mapping_instance = UserLoginInfoForMapping.from_json(json) +# print the JSON string representation of the object +print UserLoginInfoForMapping.to_json() + +# convert the object into a dict +user_login_info_for_mapping_dict = user_login_info_for_mapping_instance.to_dict() +# create an instance of UserLoginInfoForMapping from a dict +user_login_info_for_mapping_form_dict = user_login_info_for_mapping.from_dict(user_login_info_for_mapping_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/UserRegistrationInfo.md b/docs/UserRegistrationInfo.md new file mode 100644 index 0000000..505e1d3 --- /dev/null +++ b/docs/UserRegistrationInfo.md @@ -0,0 +1,32 @@ +# UserRegistrationInfo + + +## Properties +Name | Type | Description | Notes +------------ | ------------- | ------------- | ------------- +**user_id** | **str** | | [optional] +**title** | **str** | | [optional] +**organization** | **str** | | [optional] +**country** | **str** | | [optional] +**email_notification** | **bool** | | [optional] + +## Example + +```python +from vcell_api_client.models.user_registration_info import UserRegistrationInfo + +# TODO update the JSON string below +json = "{}" +# create an instance of UserRegistrationInfo from a JSON string +user_registration_info_instance = UserRegistrationInfo.from_json(json) +# print the JSON string representation of the object +print UserRegistrationInfo.to_json() + +# convert the object into a dict +user_registration_info_dict = user_registration_info_instance.to_dict() +# create an instance of UserRegistrationInfo from a dict +user_registration_info_form_dict = user_registration_info.from_dict(user_registration_info_dict) +``` +[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md) + + diff --git a/docs/UsersResourceApi.md b/docs/UsersResourceApi.md new file mode 100644 index 0000000..95c5b46 --- /dev/null +++ b/docs/UsersResourceApi.md @@ -0,0 +1,480 @@ +# vcell_api_client.UsersResourceApi + +All URIs are relative to *https://vcellapi-test.cam.uchc.edu* + +Method | HTTP request | Description +------------- | ------------- | ------------- +[**forgot_legacy_password**](UsersResourceApi.md#forgot_legacy_password) | **POST** /api/v1/users/forgotLegacyPassword | The end user has forgotten the legacy password they used for VCell, so they will be emailed it. +[**get_legacy_api_token**](UsersResourceApi.md#get_legacy_api_token) | **POST** /api/v1/users/bearerToken | Get token for legacy API +[**get_mapped_user**](UsersResourceApi.md#get_mapped_user) | **GET** /api/v1/users/mappedUser | Get mapped VCell identity +[**get_me**](UsersResourceApi.md#get_me) | **GET** /api/v1/users/me | Get current user +[**map_new_user**](UsersResourceApi.md#map_new_user) | **POST** /api/v1/users/newUser | create vcell user +[**map_user**](UsersResourceApi.md#map_user) | **POST** /api/v1/users/mapUser | map vcell user +[**unmap_user**](UsersResourceApi.md#unmap_user) | **PUT** /api/v1/users/unmapUser/{userName} | remove vcell identity mapping + + +# **forgot_legacy_password** +> forgot_legacy_password(user_id=user_id) + +The end user has forgotten the legacy password they used for VCell, so they will be emailed it. + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + user_id = 'user_id_example' # str | (optional) + + try: + # The end user has forgotten the legacy password they used for VCell, so they will be emailed it. + api_instance.forgot_legacy_password(user_id=user_id) + except Exception as e: + print("Exception when calling UsersResourceApi->forgot_legacy_password: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **user_id** | **str**| | [optional] + +### Return type + +void (empty response body) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: Not defined + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | Legacy password sent in email | - | +**401** | Need to login to Auth0 | - | +**500** | Internal Error | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **get_legacy_api_token** +> AccesTokenRepresentationRecord get_legacy_api_token() + +Get token for legacy API + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.acces_token_representation_record import AccesTokenRepresentationRecord +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + + try: + # Get token for legacy API + api_response = api_instance.get_legacy_api_token() + print("The response of UsersResourceApi->get_legacy_api_token:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling UsersResourceApi->get_legacy_api_token: %s\n" % e) +``` + + + +### Parameters +This endpoint does not need any parameter. + +### Return type + +[**AccesTokenRepresentationRecord**](AccesTokenRepresentationRecord.md) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **get_mapped_user** +> UserIdentityJSONSafe get_mapped_user() + +Get mapped VCell identity + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.user_identity_json_safe import UserIdentityJSONSafe +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + + try: + # Get mapped VCell identity + api_response = api_instance.get_mapped_user() + print("The response of UsersResourceApi->get_mapped_user:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling UsersResourceApi->get_mapped_user: %s\n" % e) +``` + + + +### Parameters +This endpoint does not need any parameter. + +### Return type + +[**UserIdentityJSONSafe**](UserIdentityJSONSafe.md) + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | Successful, returning the identity | - | +**404** | Identity not found | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **get_me** +> Identity get_me() + +Get current user + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.identity import Identity +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + + try: + # Get current user + api_response = api_instance.get_me() + print("The response of UsersResourceApi->get_me:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling UsersResourceApi->get_me: %s\n" % e) +``` + + + +### Parameters +This endpoint does not need any parameter. + +### Return type + +[**Identity**](Identity.md) + +### Authorization + +No authorization required + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **map_new_user** +> map_new_user(user_registration_info=user_registration_info) + +create vcell user + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.user_registration_info import UserRegistrationInfo +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + user_registration_info = vcell_api_client.UserRegistrationInfo() # UserRegistrationInfo | (optional) + + try: + # create vcell user + api_instance.map_new_user(user_registration_info=user_registration_info) + except Exception as e: + print("Exception when calling UsersResourceApi->map_new_user: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **user_registration_info** | [**UserRegistrationInfo**](UserRegistrationInfo.md)| | [optional] + +### Return type + +void (empty response body) + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: application/json + - **Accept**: Not defined + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | Successful, returning the identity | - | +**409** | VCell Identity not mapped, userid already exists | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **map_user** +> bool map_user(user_login_info_for_mapping=user_login_info_for_mapping) + +map vcell user + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.models.user_login_info_for_mapping import UserLoginInfoForMapping +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + user_login_info_for_mapping = vcell_api_client.UserLoginInfoForMapping() # UserLoginInfoForMapping | (optional) + + try: + # map vcell user + api_response = api_instance.map_user(user_login_info_for_mapping=user_login_info_for_mapping) + print("The response of UsersResourceApi->map_user:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling UsersResourceApi->map_user: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **user_login_info_for_mapping** | [**UserLoginInfoForMapping**](UserLoginInfoForMapping.md)| | [optional] + +### Return type + +**bool** + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: application/json + - **Accept**: text/plain + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + +# **unmap_user** +> bool unmap_user(user_name) + +remove vcell identity mapping + +### Example + +```python +import time +import os +import vcell_api_client +from vcell_api_client.rest import ApiException +from pprint import pprint + +# Defining the host is optional and defaults to https://vcellapi-test.cam.uchc.edu +# See configuration.py for a list of all supported configuration parameters. +configuration = vcell_api_client.Configuration( + host = "https://vcellapi-test.cam.uchc.edu" +) + +# The client must configure the authentication and authorization parameters +# in accordance with the API server security policy. +# Examples for each auth method are provided below, use the example that +# satisfies your auth use case. + +# Enter a context with an instance of the API client +with vcell_api_client.ApiClient(configuration) as api_client: + # Create an instance of the API class + api_instance = vcell_api_client.UsersResourceApi(api_client) + user_name = 'user_name_example' # str | + + try: + # remove vcell identity mapping + api_response = api_instance.unmap_user(user_name) + print("The response of UsersResourceApi->unmap_user:\n") + pprint(api_response) + except Exception as e: + print("Exception when calling UsersResourceApi->unmap_user: %s\n" % e) +``` + + + +### Parameters + +Name | Type | Description | Notes +------------- | ------------- | ------------- | ------------- + **user_name** | **str**| | + +### Return type + +**bool** + +### Authorization + +[openId](../README.md#openId) + +### HTTP request headers + + - **Content-Type**: Not defined + - **Accept**: application/json + +### HTTP response details +| Status code | Description | Response headers | +|-------------|-------------|------------------| +**200** | OK | - | +**401** | Not Authorized | - | +**403** | Not Allowed | - | + +[[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md) + diff --git a/git_push.sh b/git_push.sh new file mode 100644 index 0000000..f53a75d --- /dev/null +++ b/git_push.sh @@ -0,0 +1,57 @@ +#!/bin/sh +# ref: https://help.github.com/articles/adding-an-existing-project-to-github-using-the-command-line/ +# +# Usage example: /bin/sh ./git_push.sh wing328 openapi-petstore-perl "minor update" "gitlab.com" + +git_user_id=$1 +git_repo_id=$2 +release_note=$3 +git_host=$4 + +if [ "$git_host" = "" ]; then + git_host="github.com" + echo "[INFO] No command line input provided. Set \$git_host to $git_host" +fi + +if [ "$git_user_id" = "" ]; then + git_user_id="GIT_USER_ID" + echo "[INFO] No command line input provided. Set \$git_user_id to $git_user_id" +fi + +if [ "$git_repo_id" = "" ]; then + git_repo_id="GIT_REPO_ID" + echo "[INFO] No command line input provided. Set \$git_repo_id to $git_repo_id" +fi + +if [ "$release_note" = "" ]; then + release_note="Minor update" + echo "[INFO] No command line input provided. Set \$release_note to $release_note" +fi + +# Initialize the local directory as a Git repository +git init + +# Adds the files in the local repository and stages them for commit. +git add . + +# Commits the tracked changes and prepares them to be pushed to a remote repository. +git commit -m "$release_note" + +# Sets the new remote +git_remote=$(git remote) +if [ "$git_remote" = "" ]; then # git remote not defined + + if [ "$GIT_TOKEN" = "" ]; then + echo "[INFO] \$GIT_TOKEN (environment variable) is not set. 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+content-hash = "8b1ed3761ebb12dacbd907d7c1071d9df6744d29af75295387261f4860500b35" diff --git a/pyproject.toml b/pyproject.toml index 1a5fb53..0f3d05f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,12 +1,14 @@ -[tool] [tool.poetry] -name = "vcell-api-client" +name = "vcell_api_client" version = "0.1.0" -homepage = "https://github.com/jcschaff/vcell-api-client" -description = "Client library to connect to VCell remote API." -authors = ["James Schaff "] +homepage = "https://github.com/virtualcell/vcell-api-client" +description = "VCell API" +authors = ["VCell API Support ", "James Schaff "] readme = "README.md" -license = "MIT" +repository = "https://github.com/GIT_USER_ID/GIT_REPO_ID" +keywords = ["OpenAPI", "OpenAPI-Generator", "VCell API"] +include = ["vcell_api_client/py.typed"] +license = "MIT" classifiers=[ 'Development Status :: 2 - Pre-Alpha', 'Intended Audience :: Developers', @@ -24,7 +26,12 @@ packages = [ ] [tool.poetry.dependencies] -python = ">=3.6.2,<4.0" +python = ">=3.9,<4.0" + +urllib3 = ">= 1.25.3" +python-dateutil = ">=2.8.2" +pydantic = ">=2" +typing-extensions = ">=4.7.1" black = { version = "^21.5b2", optional = true} isort = { version = "^5.8.0", optional = true} @@ -103,3 +110,10 @@ skip_gitignore = true [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" + +#[build-system] +#requires = ["setuptools"] +#build-backend = "setuptools.build_meta" +# +#[tool.pylint.'MESSAGES CONTROL'] +#extension-pkg-whitelist = "pydantic" diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..cc85509 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,5 @@ +python_dateutil >= 2.5.3 +setuptools >= 21.0.0 +urllib3 >= 1.25.3, < 2.1.0 +pydantic >= 2 +typing-extensions >= 4.7.1 diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..8ad4b32 --- /dev/null +++ b/setup.py @@ -0,0 +1,51 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from setuptools import setup, find_packages # noqa: H301 + +# To install the library, run the following +# +# python setup.py install +# +# prerequisite: setuptools +# http://pypi.python.org/pypi/setuptools +NAME = "vcell-api-client" +VERSION = "0.1.0" +PYTHON_REQUIRES = ">=3.7" +REQUIRES = [ + "urllib3 >= 1.25.3, < 2.1.0", + "python-dateutil", + "pydantic >= 2", + "typing-extensions >= 4.7.1", +] + +setup( + name=NAME, + version=VERSION, + description="VCell API", + author="VCell API Support", + author_email="vcell_support@uchc.com", + url="https://github.com/virtualcell/vcell-api-client.git", + keywords=["OpenAPI", "OpenAPI-Generator", "VCell API"], + install_requires=REQUIRES, + packages=find_packages(exclude=["test", "tests"]), + include_package_data=True, + license="MIT", + long_description_content_type='text/markdown', + long_description="""\ + VCell API + """, # noqa: E501 + package_data={"vcell_api_client": ["py.typed"]}, +) diff --git a/test-requirements.txt b/test-requirements.txt new file mode 100644 index 0000000..3a0d0b9 --- /dev/null +++ b/test-requirements.txt @@ -0,0 +1,3 @@ +pytest~=7.1.3 +pytest-cov>=2.8.1 +pytest-randomly>=3.12.0 diff --git a/test/__init__.py b/test/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/test/test_acces_token_representation_record.py b/test/test_acces_token_representation_record.py new file mode 100644 index 0000000..08f0a39 --- /dev/null +++ b/test/test_acces_token_representation_record.py @@ -0,0 +1,57 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.acces_token_representation_record import AccesTokenRepresentationRecord + +class TestAccesTokenRepresentationRecord(unittest.TestCase): + """AccesTokenRepresentationRecord unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> AccesTokenRepresentationRecord: + """Test AccesTokenRepresentationRecord + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `AccesTokenRepresentationRecord` + """ + model = AccesTokenRepresentationRecord() + if include_optional: + return AccesTokenRepresentationRecord( + token = '', + creation_date_seconds = 56, + expire_date_seconds = 56, + user_id = '', + user_key = '' + ) + else: + return AccesTokenRepresentationRecord( + ) + """ + + def testAccesTokenRepresentationRecord(self): + """Test AccesTokenRepresentationRecord""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_admin_resource_api.py b/test/test_admin_resource_api.py new file mode 100644 index 0000000..60d4a10 --- /dev/null +++ b/test/test_admin_resource_api.py @@ -0,0 +1,39 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest + +from vcell_api_client.api.admin_resource_api import AdminResourceApi + + +class TestAdminResourceApi(unittest.TestCase): + """AdminResourceApi unit test stubs""" + + def setUp(self) -> None: + self.api = AdminResourceApi() + + def tearDown(self) -> None: + pass + + def test_get_usage(self) -> None: + """Test case for get_usage + + Get usage summary + """ + pass + + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_bio_model.py b/test/test_bio_model.py new file mode 100644 index 0000000..b085fa1 --- /dev/null +++ b/test/test_bio_model.py @@ -0,0 +1,71 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.bio_model import BioModel + +class TestBioModel(unittest.TestCase): + """BioModel unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> BioModel: + """Test BioModel + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `BioModel` + """ + model = BioModel() + if include_optional: + return BioModel( + bm_key = '', + name = '', + privacy = 56, + group_users = [ + '' + ], + saved_date = 56, + annot = '', + branch_id = '', + phys_model_key = '', + owner_name = '', + owner_key = '', + simulations = [ + vcell_api_client.models.simulation.Simulation( + name = '', ) + ], + applications = [ + vcell_api_client.models.application.Application() + ] + ) + else: + return BioModel( + ) + """ + + def testBioModel(self): + """Test BioModel""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_bio_model_resource_api.py b/test/test_bio_model_resource_api.py new file mode 100644 index 0000000..8be23d9 --- /dev/null +++ b/test/test_bio_model_resource_api.py @@ -0,0 +1,53 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest + +from vcell_api_client.api.bio_model_resource_api import BioModelResourceApi + + +class TestBioModelResourceApi(unittest.TestCase): + """BioModelResourceApi unit test stubs""" + + def setUp(self) -> None: + self.api = BioModelResourceApi() + + def tearDown(self) -> None: + pass + + def test_delete_bio_model(self) -> None: + """Test case for delete_bio_model + + Delete the BioModel from VCell's database. + """ + pass + + def test_get_biomodel_by_id(self) -> None: + """Test case for get_biomodel_by_id + + Get BioModel information in JSON format by ID. + """ + pass + + def test_upload_bio_model(self) -> None: + """Test case for upload_bio_model + + Upload the BioModel to VCell database. Returns BioModel ID. + """ + pass + + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_biomodel_ref.py b/test/test_biomodel_ref.py new file mode 100644 index 0000000..3527ea7 --- /dev/null +++ b/test/test_biomodel_ref.py @@ -0,0 +1,57 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.biomodel_ref import BiomodelRef + +class TestBiomodelRef(unittest.TestCase): + """BiomodelRef unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> BiomodelRef: + """Test BiomodelRef + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `BiomodelRef` + """ + model = BiomodelRef() + if include_optional: + return BiomodelRef( + bm_key = 56, + name = '', + owner_name = '', + owner_key = 56, + version_flag = 56 + ) + else: + return BiomodelRef( + ) + """ + + def testBiomodelRef(self): + """Test BiomodelRef""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_hello_world_api.py b/test/test_hello_world_api.py new file mode 100644 index 0000000..60bf732 --- /dev/null +++ b/test/test_hello_world_api.py @@ -0,0 +1,39 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest + +from vcell_api_client.api.hello_world_api import HelloWorldApi + + +class TestHelloWorldApi(unittest.TestCase): + """HelloWorldApi unit test stubs""" + + def setUp(self) -> None: + self.api = HelloWorldApi() + + def tearDown(self) -> None: + pass + + def test_get_hello_world(self) -> None: + """Test case for get_hello_world + + Get hello world message. + """ + pass + + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_hello_world_message.py b/test/test_hello_world_message.py new file mode 100644 index 0000000..2e79cca --- /dev/null +++ b/test/test_hello_world_message.py @@ -0,0 +1,53 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.hello_world_message import HelloWorldMessage + +class TestHelloWorldMessage(unittest.TestCase): + """HelloWorldMessage unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> HelloWorldMessage: + """Test HelloWorldMessage + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `HelloWorldMessage` + """ + model = HelloWorldMessage() + if include_optional: + return HelloWorldMessage( + message = '' + ) + else: + return HelloWorldMessage( + ) + """ + + def testHelloWorldMessage(self): + """Test HelloWorldMessage""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_identity.py b/test/test_identity.py new file mode 100644 index 0000000..b0a68e8 --- /dev/null +++ b/test/test_identity.py @@ -0,0 +1,62 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.identity import Identity + +class TestIdentity(unittest.TestCase): + """Identity unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> Identity: + """Test Identity + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `Identity` + """ + model = Identity() + if include_optional: + return Identity( + principal_name = '', + roles = [ + '' + ], + attributes = [ + '' + ], + credentials = [ + '' + ] + ) + else: + return Identity( + ) + """ + + def testIdentity(self): + """Test Identity""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_mathmodel_ref.py b/test/test_mathmodel_ref.py new file mode 100644 index 0000000..539a399 --- /dev/null +++ b/test/test_mathmodel_ref.py @@ -0,0 +1,57 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.mathmodel_ref import MathmodelRef + +class TestMathmodelRef(unittest.TestCase): + """MathmodelRef unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> MathmodelRef: + """Test MathmodelRef + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `MathmodelRef` + """ + model = MathmodelRef() + if include_optional: + return MathmodelRef( + mm_key = 56, + name = '', + owner_name = '', + owner_key = 56, + version_flag = 56 + ) + else: + return MathmodelRef( + ) + """ + + def testMathmodelRef(self): + """Test MathmodelRef""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_publication.py b/test/test_publication.py new file mode 100644 index 0000000..2b61bb4 --- /dev/null +++ b/test/test_publication.py @@ -0,0 +1,81 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.publication import Publication + +class TestPublication(unittest.TestCase): + """Publication unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> Publication: + """Test Publication + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `Publication` + """ + model = Publication() + if include_optional: + return Publication( + pub_key = 56, + title = '', + authors = [ + '' + ], + year = 56, + citation = '', + pubmedid = '', + doi = '', + endnoteid = 56, + url = '', + wittid = 56, + biomodel_refs = [ + vcell_api_client.models.biomodel_ref.BiomodelRef( + bm_key = 56, + name = '', + owner_name = '', + owner_key = 56, + version_flag = 56, ) + ], + mathmodel_refs = [ + vcell_api_client.models.mathmodel_ref.MathmodelRef( + mm_key = 56, + name = '', + owner_name = '', + owner_key = 56, + version_flag = 56, ) + ], + var_date = 'Thu Mar 10 00:00:00 UTC 2022' + ) + else: + return Publication( + ) + """ + + def testPublication(self): + """Test Publication""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_publication_resource_api.py b/test/test_publication_resource_api.py new file mode 100644 index 0000000..56568e9 --- /dev/null +++ b/test/test_publication_resource_api.py @@ -0,0 +1,67 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest + +from vcell_api_client.api.publication_resource_api import PublicationResourceApi + + +class TestPublicationResourceApi(unittest.TestCase): + """PublicationResourceApi unit test stubs""" + + def setUp(self) -> None: + self.api = PublicationResourceApi() + + def tearDown(self) -> None: + pass + + def test_create_publication(self) -> None: + """Test case for create_publication + + Create publication + """ + pass + + def test_delete_publication(self) -> None: + """Test case for delete_publication + + Delete publication + """ + pass + + def test_get_publication_by_id(self) -> None: + """Test case for get_publication_by_id + + Get publication by ID + """ + pass + + def test_get_publications(self) -> None: + """Test case for get_publications + + Get all publications + """ + pass + + def test_update_publication(self) -> None: + """Test case for update_publication + + Create publication + """ + pass + + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_simulation.py b/test/test_simulation.py new file mode 100644 index 0000000..7218d4f --- /dev/null +++ b/test/test_simulation.py @@ -0,0 +1,53 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.simulation import Simulation + +class TestSimulation(unittest.TestCase): + """Simulation unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> Simulation: + """Test Simulation + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `Simulation` + """ + model = Simulation() + if include_optional: + return Simulation( + name = '' + ) + else: + return Simulation( + ) + """ + + def testSimulation(self): + """Test Simulation""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_user_identity_json_safe.py b/test/test_user_identity_json_safe.py new file mode 100644 index 0000000..9851449 --- /dev/null +++ b/test/test_user_identity_json_safe.py @@ -0,0 +1,56 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.user_identity_json_safe import UserIdentityJSONSafe + +class TestUserIdentityJSONSafe(unittest.TestCase): + """UserIdentityJSONSafe unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> UserIdentityJSONSafe: + """Test UserIdentityJSONSafe + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `UserIdentityJSONSafe` + """ + model = UserIdentityJSONSafe() + if include_optional: + return UserIdentityJSONSafe( + user_name = '', + id = 1.337, + subject = '', + insert_date = '' + ) + else: + return UserIdentityJSONSafe( + ) + """ + + def testUserIdentityJSONSafe(self): + """Test UserIdentityJSONSafe""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_user_login_info_for_mapping.py b/test/test_user_login_info_for_mapping.py new file mode 100644 index 0000000..3c55f07 --- /dev/null +++ b/test/test_user_login_info_for_mapping.py @@ -0,0 +1,54 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.user_login_info_for_mapping import UserLoginInfoForMapping + +class TestUserLoginInfoForMapping(unittest.TestCase): + """UserLoginInfoForMapping unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> UserLoginInfoForMapping: + """Test UserLoginInfoForMapping + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `UserLoginInfoForMapping` + """ + model = UserLoginInfoForMapping() + if include_optional: + return UserLoginInfoForMapping( + user_id = '', + password = '' + ) + else: + return UserLoginInfoForMapping( + ) + """ + + def testUserLoginInfoForMapping(self): + """Test UserLoginInfoForMapping""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_user_registration_info.py b/test/test_user_registration_info.py new file mode 100644 index 0000000..62320cd --- /dev/null +++ b/test/test_user_registration_info.py @@ -0,0 +1,57 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest +import datetime + +from vcell_api_client.models.user_registration_info import UserRegistrationInfo + +class TestUserRegistrationInfo(unittest.TestCase): + """UserRegistrationInfo unit test stubs""" + + def setUp(self): + pass + + def tearDown(self): + pass + + def make_instance(self, include_optional) -> UserRegistrationInfo: + """Test UserRegistrationInfo + include_option is a boolean, when False only required + params are included, when True both required and + optional params are included """ + # uncomment below to create an instance of `UserRegistrationInfo` + """ + model = UserRegistrationInfo() + if include_optional: + return UserRegistrationInfo( + user_id = '', + title = '', + organization = '', + country = '', + email_notification = True + ) + else: + return UserRegistrationInfo( + ) + """ + + def testUserRegistrationInfo(self): + """Test UserRegistrationInfo""" + # inst_req_only = self.make_instance(include_optional=False) + # inst_req_and_optional = self.make_instance(include_optional=True) + +if __name__ == '__main__': + unittest.main() diff --git a/test/test_users_resource_api.py b/test/test_users_resource_api.py new file mode 100644 index 0000000..fda672b --- /dev/null +++ b/test/test_users_resource_api.py @@ -0,0 +1,81 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import unittest + +from vcell_api_client.api.users_resource_api import UsersResourceApi + + +class TestUsersResourceApi(unittest.TestCase): + """UsersResourceApi unit test stubs""" + + def setUp(self) -> None: + self.api = UsersResourceApi() + + def tearDown(self) -> None: + pass + + def test_forgot_legacy_password(self) -> None: + """Test case for forgot_legacy_password + + The end user has forgotten the legacy password they used for VCell, so they will be emailed it. + """ + pass + + def test_get_legacy_api_token(self) -> None: + """Test case for get_legacy_api_token + + Get token for legacy API + """ + pass + + def test_get_mapped_user(self) -> None: + """Test case for get_mapped_user + + Get mapped VCell identity + """ + pass + + def test_get_me(self) -> None: + """Test case for get_me + + Get current user + """ + pass + + def test_map_new_user(self) -> None: + """Test case for map_new_user + + create vcell user + """ + pass + + def test_map_user(self) -> None: + """Test case for map_user + + map vcell user + """ + pass + + def test_unmap_user(self) -> None: + """Test case for unmap_user + + remove vcell identity mapping + """ + pass + + +if __name__ == '__main__': + unittest.main() diff --git a/tox.ini b/tox.ini new file mode 100644 index 0000000..4848b8b --- /dev/null +++ b/tox.ini @@ -0,0 +1,9 @@ +[tox] +envlist = py3 + +[testenv] +deps=-r{toxinidir}/requirements.txt + -r{toxinidir}/test-requirements.txt + +commands= + pytest --cov=vcell_api_client diff --git a/vcell_api_client/__init__.py b/vcell_api_client/__init__.py index 3c569e5..058c295 100644 --- a/vcell_api_client/__init__.py +++ b/vcell_api_client/__init__.py @@ -1,5 +1,49 @@ -"""Top-level package for VCell API client.""" +# coding: utf-8 -__author__ = """James Schaff""" -__email__ = 'schaff@uchc.edu' -__version__ = '0.1.0' +# flake8: noqa + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +__version__ = "0.1.0" + +# import apis into sdk package +from vcell_api_client.api.admin_resource_api import AdminResourceApi +from vcell_api_client.api.bio_model_resource_api import BioModelResourceApi +from vcell_api_client.api.hello_world_api import HelloWorldApi +from vcell_api_client.api.publication_resource_api import PublicationResourceApi +from vcell_api_client.api.users_resource_api import UsersResourceApi + +# import ApiClient +from vcell_api_client.api_response import ApiResponse +from vcell_api_client.api_client import ApiClient +from vcell_api_client.configuration import Configuration +from vcell_api_client.exceptions import OpenApiException +from vcell_api_client.exceptions import ApiTypeError +from vcell_api_client.exceptions import ApiValueError +from vcell_api_client.exceptions import ApiKeyError +from vcell_api_client.exceptions import ApiAttributeError +from vcell_api_client.exceptions import ApiException + +# import models into sdk package +from vcell_api_client.models.acces_token_representation_record import AccesTokenRepresentationRecord +from vcell_api_client.models.bio_model import BioModel +from vcell_api_client.models.biomodel_ref import BiomodelRef +from vcell_api_client.models.hello_world_message import HelloWorldMessage +from vcell_api_client.models.identity import Identity +from vcell_api_client.models.mathmodel_ref import MathmodelRef +from vcell_api_client.models.publication import Publication +from vcell_api_client.models.simulation import Simulation +from vcell_api_client.models.user_identity_json_safe import UserIdentityJSONSafe +from vcell_api_client.models.user_login_info_for_mapping import UserLoginInfoForMapping +from vcell_api_client.models.user_registration_info import UserRegistrationInfo diff --git a/vcell_api_client/api/__init__.py b/vcell_api_client/api/__init__.py new file mode 100644 index 0000000..4ce1f18 --- /dev/null +++ b/vcell_api_client/api/__init__.py @@ -0,0 +1,9 @@ +# flake8: noqa + +# import apis into api package +from vcell_api_client.api.admin_resource_api import AdminResourceApi +from vcell_api_client.api.bio_model_resource_api import BioModelResourceApi +from vcell_api_client.api.hello_world_api import HelloWorldApi +from vcell_api_client.api.publication_resource_api import PublicationResourceApi +from vcell_api_client.api.users_resource_api import UsersResourceApi + diff --git a/vcell_api_client/api/admin_resource_api.py b/vcell_api_client/api/admin_resource_api.py new file mode 100644 index 0000000..eaa3ca4 --- /dev/null +++ b/vcell_api_client/api/admin_resource_api.py @@ -0,0 +1,295 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import io +import warnings + +from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt +from typing import Dict, List, Optional, Tuple, Union, Any + +try: + from typing import Annotated +except ImportError: + from typing_extensions import Annotated + +from typing import Union + + +from vcell_api_client.api_client import ApiClient +from vcell_api_client.api_response import ApiResponse +from vcell_api_client.rest import RESTResponseType + + +class AdminResourceApi: + """NOTE: This class is auto generated by OpenAPI Generator + Ref: https://openapi-generator.tech + + Do not edit the class manually. + """ + + def __init__(self, api_client=None) -> None: + if api_client is None: + api_client = ApiClient.get_default() + self.api_client = api_client + + + @validate_call + def get_usage( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> bytearray: + """Get usage summary + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_usage_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bytearray", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_usage_with_http_info( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[bytearray]: + """Get usage summary + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_usage_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bytearray", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_usage_without_preload_content( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get usage summary + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_usage_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bytearray", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_usage_serialize( + self, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/pdf' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/admin/usage', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + diff --git a/vcell_api_client/api/bio_model_resource_api.py b/vcell_api_client/api/bio_model_resource_api.py new file mode 100644 index 0000000..6bd6337 --- /dev/null +++ b/vcell_api_client/api/bio_model_resource_api.py @@ -0,0 +1,826 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import io +import warnings + +from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt +from typing import Dict, List, Optional, Tuple, Union, Any + +try: + from typing import Annotated +except ImportError: + from typing_extensions import Annotated + +from pydantic import StrictStr + +from typing import Optional + +from vcell_api_client.models.bio_model import BioModel + +from vcell_api_client.api_client import ApiClient +from vcell_api_client.api_response import ApiResponse +from vcell_api_client.rest import RESTResponseType + + +class BioModelResourceApi: + """NOTE: This class is auto generated by OpenAPI Generator + Ref: https://openapi-generator.tech + + Do not edit the class manually. + """ + + def __init__(self, api_client=None) -> None: + if api_client is None: + api_client = ApiClient.get_default() + self.api_client = api_client + + + @validate_call + def delete_bio_model( + self, + bio_model_id: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> None: + """Delete the BioModel from VCell's database. + + + :param bio_model_id: (required) + :type bio_model_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._delete_bio_model_serialize( + bio_model_id=bio_model_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def delete_bio_model_with_http_info( + self, + bio_model_id: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[None]: + """Delete the BioModel from VCell's database. + + + :param bio_model_id: (required) + :type bio_model_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._delete_bio_model_serialize( + bio_model_id=bio_model_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def delete_bio_model_without_preload_content( + self, + bio_model_id: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Delete the BioModel from VCell's database. + + + :param bio_model_id: (required) + :type bio_model_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._delete_bio_model_serialize( + bio_model_id=bio_model_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _delete_bio_model_serialize( + self, + bio_model_id, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + if bio_model_id is not None: + _path_params['bioModelID'] = bio_model_id + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='DELETE', + resource_path='/api/v1/bioModel/{bioModelID}', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def get_biomodel_by_id( + self, + bio_model_id: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> BioModel: + """Get BioModel information in JSON format by ID. + + + :param bio_model_id: (required) + :type bio_model_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_biomodel_by_id_serialize( + bio_model_id=bio_model_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "BioModel" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_biomodel_by_id_with_http_info( + self, + bio_model_id: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[BioModel]: + """Get BioModel information in JSON format by ID. + + + :param bio_model_id: (required) + :type bio_model_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_biomodel_by_id_serialize( + bio_model_id=bio_model_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "BioModel" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_biomodel_by_id_without_preload_content( + self, + bio_model_id: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get BioModel information in JSON format by ID. + + + :param bio_model_id: (required) + :type bio_model_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_biomodel_by_id_serialize( + bio_model_id=bio_model_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "BioModel" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_biomodel_by_id_serialize( + self, + bio_model_id, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + if bio_model_id is not None: + _path_params['bioModelID'] = bio_model_id + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/bioModel/{bioModelID}', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def upload_bio_model( + self, + body: Optional[StrictStr] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> str: + """Upload the BioModel to VCell database. Returns BioModel ID. + + + :param body: + :type body: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._upload_bio_model_serialize( + body=body, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "str" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def upload_bio_model_with_http_info( + self, + body: Optional[StrictStr] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[str]: + """Upload the BioModel to VCell database. Returns BioModel ID. + + + :param body: + :type body: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._upload_bio_model_serialize( + body=body, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "str" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def upload_bio_model_without_preload_content( + self, + body: Optional[StrictStr] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Upload the BioModel to VCell database. Returns BioModel ID. + + + :param body: + :type body: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._upload_bio_model_serialize( + body=body, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "str" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _upload_bio_model_serialize( + self, + body, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + if body is not None: + _body_params = body + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'text/plain' + ] + ) + + # set the HTTP header `Content-Type` + if _content_type: + _header_params['Content-Type'] = _content_type + else: + _default_content_type = ( + self.api_client.select_header_content_type( + [ + 'text/xml' + ] + ) + ) + if _default_content_type is not None: + _header_params['Content-Type'] = _default_content_type + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='POST', + resource_path='/api/v1/bioModel/upload_bioModel', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + diff --git a/vcell_api_client/api/hello_world_api.py b/vcell_api_client/api/hello_world_api.py new file mode 100644 index 0000000..13325b0 --- /dev/null +++ b/vcell_api_client/api/hello_world_api.py @@ -0,0 +1,287 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import io +import warnings + +from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt +from typing import Dict, List, Optional, Tuple, Union, Any + +try: + from typing import Annotated +except ImportError: + from typing_extensions import Annotated + +from vcell_api_client.models.hello_world_message import HelloWorldMessage + +from vcell_api_client.api_client import ApiClient +from vcell_api_client.api_response import ApiResponse +from vcell_api_client.rest import RESTResponseType + + +class HelloWorldApi: + """NOTE: This class is auto generated by OpenAPI Generator + Ref: https://openapi-generator.tech + + Do not edit the class manually. + """ + + def __init__(self, api_client=None) -> None: + if api_client is None: + api_client = ApiClient.get_default() + self.api_client = api_client + + + @validate_call + def get_hello_world( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> HelloWorldMessage: + """Get hello world message. + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_hello_world_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "HelloWorldMessage" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_hello_world_with_http_info( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[HelloWorldMessage]: + """Get hello world message. + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_hello_world_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "HelloWorldMessage" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_hello_world_without_preload_content( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get hello world message. + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_hello_world_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "HelloWorldMessage" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_hello_world_serialize( + self, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/helloworld', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + diff --git a/vcell_api_client/api/publication_resource_api.py b/vcell_api_client/api/publication_resource_api.py new file mode 100644 index 0000000..a9c7ee7 --- /dev/null +++ b/vcell_api_client/api/publication_resource_api.py @@ -0,0 +1,1355 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import io +import warnings + +from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt +from typing import Dict, List, Optional, Tuple, Union, Any + +try: + from typing import Annotated +except ImportError: + from typing_extensions import Annotated + +from pydantic import StrictInt + +from typing import List, Optional + +from vcell_api_client.models.publication import Publication + +from vcell_api_client.api_client import ApiClient +from vcell_api_client.api_response import ApiResponse +from vcell_api_client.rest import RESTResponseType + + +class PublicationResourceApi: + """NOTE: This class is auto generated by OpenAPI Generator + Ref: https://openapi-generator.tech + + Do not edit the class manually. + """ + + def __init__(self, api_client=None) -> None: + if api_client is None: + api_client = ApiClient.get_default() + self.api_client = api_client + + + @validate_call + def create_publication( + self, + publication: Optional[Publication] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> int: + """Create publication + + + :param publication: + :type publication: Publication + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._create_publication_serialize( + publication=publication, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "int", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def create_publication_with_http_info( + self, + publication: Optional[Publication] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[int]: + """Create publication + + + :param publication: + :type publication: Publication + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._create_publication_serialize( + publication=publication, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "int", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def create_publication_without_preload_content( + self, + publication: Optional[Publication] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Create publication + + + :param publication: + :type publication: Publication + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._create_publication_serialize( + publication=publication, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "int", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _create_publication_serialize( + self, + publication, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + if publication is not None: + _body_params = publication + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + # set the HTTP header `Content-Type` + if _content_type: + _header_params['Content-Type'] = _content_type + else: + _default_content_type = ( + self.api_client.select_header_content_type( + [ + 'application/json' + ] + ) + ) + if _default_content_type is not None: + _header_params['Content-Type'] = _default_content_type + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='POST', + resource_path='/api/v1/publications', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def delete_publication( + self, + id: StrictInt, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> None: + """Delete publication + + + :param id: (required) + :type id: int + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._delete_publication_serialize( + id=id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def delete_publication_with_http_info( + self, + id: StrictInt, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[None]: + """Delete publication + + + :param id: (required) + :type id: int + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._delete_publication_serialize( + id=id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def delete_publication_without_preload_content( + self, + id: StrictInt, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Delete publication + + + :param id: (required) + :type id: int + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._delete_publication_serialize( + id=id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _delete_publication_serialize( + self, + id, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + if id is not None: + _path_params['id'] = id + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='DELETE', + resource_path='/api/v1/publications/{id}', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def get_publication_by_id( + self, + id: StrictInt, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> Publication: + """Get publication by ID + + + :param id: (required) + :type id: int + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_publication_by_id_serialize( + id=id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Publication" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_publication_by_id_with_http_info( + self, + id: StrictInt, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[Publication]: + """Get publication by ID + + + :param id: (required) + :type id: int + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_publication_by_id_serialize( + id=id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Publication" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_publication_by_id_without_preload_content( + self, + id: StrictInt, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get publication by ID + + + :param id: (required) + :type id: int + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_publication_by_id_serialize( + id=id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Publication" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_publication_by_id_serialize( + self, + id, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + if id is not None: + _path_params['id'] = id + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/publications/{id}', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def get_publications( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> List[Publication]: + """Get all publications + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_publications_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "List[Publication]" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_publications_with_http_info( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[List[Publication]]: + """Get all publications + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_publications_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "List[Publication]" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_publications_without_preload_content( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get all publications + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_publications_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "List[Publication]" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_publications_serialize( + self, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/publications', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def update_publication( + self, + publication: Optional[Publication] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> Publication: + """Create publication + + + :param publication: + :type publication: Publication + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._update_publication_serialize( + publication=publication, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Publication", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def update_publication_with_http_info( + self, + publication: Optional[Publication] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[Publication]: + """Create publication + + + :param publication: + :type publication: Publication + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._update_publication_serialize( + publication=publication, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Publication", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def update_publication_without_preload_content( + self, + publication: Optional[Publication] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Create publication + + + :param publication: + :type publication: Publication + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._update_publication_serialize( + publication=publication, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Publication", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _update_publication_serialize( + self, + publication, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + if publication is not None: + _body_params = publication + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + # set the HTTP header `Content-Type` + if _content_type: + _header_params['Content-Type'] = _content_type + else: + _default_content_type = ( + self.api_client.select_header_content_type( + [ + 'application/json' + ] + ) + ) + if _default_content_type is not None: + _header_params['Content-Type'] = _default_content_type + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='PUT', + resource_path='/api/v1/publications', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + diff --git a/vcell_api_client/api/users_resource_api.py b/vcell_api_client/api/users_resource_api.py new file mode 100644 index 0000000..b86868a --- /dev/null +++ b/vcell_api_client/api/users_resource_api.py @@ -0,0 +1,1848 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import io +import warnings + +from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt +from typing import Dict, List, Optional, Tuple, Union, Any + +try: + from typing import Annotated +except ImportError: + from typing_extensions import Annotated + +from pydantic import StrictStr + +from typing import Optional + +from vcell_api_client.models.acces_token_representation_record import AccesTokenRepresentationRecord +from vcell_api_client.models.identity import Identity +from vcell_api_client.models.user_identity_json_safe import UserIdentityJSONSafe +from vcell_api_client.models.user_login_info_for_mapping import UserLoginInfoForMapping +from vcell_api_client.models.user_registration_info import UserRegistrationInfo + +from vcell_api_client.api_client import ApiClient +from vcell_api_client.api_response import ApiResponse +from vcell_api_client.rest import RESTResponseType + + +class UsersResourceApi: + """NOTE: This class is auto generated by OpenAPI Generator + Ref: https://openapi-generator.tech + + Do not edit the class manually. + """ + + def __init__(self, api_client=None) -> None: + if api_client is None: + api_client = ApiClient.get_default() + self.api_client = api_client + + + @validate_call + def forgot_legacy_password( + self, + user_id: Optional[StrictStr] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> None: + """The end user has forgotten the legacy password they used for VCell, so they will be emailed it. + + + :param user_id: + :type user_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._forgot_legacy_password_serialize( + user_id=user_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def forgot_legacy_password_with_http_info( + self, + user_id: Optional[StrictStr] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[None]: + """The end user has forgotten the legacy password they used for VCell, so they will be emailed it. + + + :param user_id: + :type user_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._forgot_legacy_password_serialize( + user_id=user_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def forgot_legacy_password_without_preload_content( + self, + user_id: Optional[StrictStr] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """The end user has forgotten the legacy password they used for VCell, so they will be emailed it. + + + :param user_id: + :type user_id: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._forgot_legacy_password_serialize( + user_id=user_id, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _forgot_legacy_password_serialize( + self, + user_id, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + if user_id is not None: + + _query_params.append(('userID', user_id)) + + # process the header parameters + # process the form parameters + # process the body parameter + + + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='POST', + resource_path='/api/v1/users/forgotLegacyPassword', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def get_legacy_api_token( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> AccesTokenRepresentationRecord: + """Get token for legacy API + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_legacy_api_token_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "AccesTokenRepresentationRecord" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_legacy_api_token_with_http_info( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[AccesTokenRepresentationRecord]: + """Get token for legacy API + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_legacy_api_token_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "AccesTokenRepresentationRecord" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_legacy_api_token_without_preload_content( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get token for legacy API + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_legacy_api_token_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "AccesTokenRepresentationRecord" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_legacy_api_token_serialize( + self, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='POST', + resource_path='/api/v1/users/bearerToken', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def get_mapped_user( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> UserIdentityJSONSafe: + """Get mapped VCell identity + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_mapped_user_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "UserIdentityJSONSafe", + '404': None, + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_mapped_user_with_http_info( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[UserIdentityJSONSafe]: + """Get mapped VCell identity + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_mapped_user_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "UserIdentityJSONSafe", + '404': None, + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_mapped_user_without_preload_content( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get mapped VCell identity + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_mapped_user_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "UserIdentityJSONSafe", + '404': None, + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_mapped_user_serialize( + self, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/users/mappedUser', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def get_me( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> Identity: + """Get current user + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_me_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Identity" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def get_me_with_http_info( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[Identity]: + """Get current user + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_me_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Identity" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def get_me_without_preload_content( + self, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """Get current user + + + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._get_me_serialize( + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "Identity" + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _get_me_serialize( + self, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + ] + + return self.api_client.param_serialize( + method='GET', + resource_path='/api/v1/users/me', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def map_new_user( + self, + user_registration_info: Optional[UserRegistrationInfo] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> None: + """create vcell user + + + :param user_registration_info: + :type user_registration_info: UserRegistrationInfo + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._map_new_user_serialize( + user_registration_info=user_registration_info, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def map_new_user_with_http_info( + self, + user_registration_info: Optional[UserRegistrationInfo] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[None]: + """create vcell user + + + :param user_registration_info: + :type user_registration_info: UserRegistrationInfo + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._map_new_user_serialize( + user_registration_info=user_registration_info, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def map_new_user_without_preload_content( + self, + user_registration_info: Optional[UserRegistrationInfo] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """create vcell user + + + :param user_registration_info: + :type user_registration_info: UserRegistrationInfo + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._map_new_user_serialize( + user_registration_info=user_registration_info, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _map_new_user_serialize( + self, + user_registration_info, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + if user_registration_info is not None: + _body_params = user_registration_info + + + + # set the HTTP header `Content-Type` + if _content_type: + _header_params['Content-Type'] = _content_type + else: + _default_content_type = ( + self.api_client.select_header_content_type( + [ + 'application/json' + ] + ) + ) + if _default_content_type is not None: + _header_params['Content-Type'] = _default_content_type + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='POST', + resource_path='/api/v1/users/newUser', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def map_user( + self, + user_login_info_for_mapping: Optional[UserLoginInfoForMapping] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> bool: + """map vcell user + + + :param user_login_info_for_mapping: + :type user_login_info_for_mapping: UserLoginInfoForMapping + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._map_user_serialize( + user_login_info_for_mapping=user_login_info_for_mapping, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bool", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def map_user_with_http_info( + self, + user_login_info_for_mapping: Optional[UserLoginInfoForMapping] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[bool]: + """map vcell user + + + :param user_login_info_for_mapping: + :type user_login_info_for_mapping: UserLoginInfoForMapping + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._map_user_serialize( + user_login_info_for_mapping=user_login_info_for_mapping, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bool", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def map_user_without_preload_content( + self, + user_login_info_for_mapping: Optional[UserLoginInfoForMapping] = None, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """map vcell user + + + :param user_login_info_for_mapping: + :type user_login_info_for_mapping: UserLoginInfoForMapping + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._map_user_serialize( + user_login_info_for_mapping=user_login_info_for_mapping, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bool", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _map_user_serialize( + self, + user_login_info_for_mapping, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + if user_login_info_for_mapping is not None: + _body_params = user_login_info_for_mapping + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'text/plain' + ] + ) + + # set the HTTP header `Content-Type` + if _content_type: + _header_params['Content-Type'] = _content_type + else: + _default_content_type = ( + self.api_client.select_header_content_type( + [ + 'application/json' + ] + ) + ) + if _default_content_type is not None: + _header_params['Content-Type'] = _default_content_type + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='POST', + resource_path='/api/v1/users/mapUser', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + + + + @validate_call + def unmap_user( + self, + user_name: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> bool: + """remove vcell identity mapping + + + :param user_name: (required) + :type user_name: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._unmap_user_serialize( + user_name=user_name, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bool", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ).data + + + @validate_call + def unmap_user_with_http_info( + self, + user_name: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> ApiResponse[bool]: + """remove vcell identity mapping + + + :param user_name: (required) + :type user_name: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._unmap_user_serialize( + user_name=user_name, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bool", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + response_data.read() + return self.api_client.response_deserialize( + response_data=response_data, + response_types_map=_response_types_map, + ) + + + @validate_call + def unmap_user_without_preload_content( + self, + user_name: StrictStr, + _request_timeout: Union[ + None, + Annotated[StrictFloat, Field(gt=0)], + Tuple[ + Annotated[StrictFloat, Field(gt=0)], + Annotated[StrictFloat, Field(gt=0)] + ] + ] = None, + _request_auth: Optional[Dict[StrictStr, Any]] = None, + _content_type: Optional[StrictStr] = None, + _headers: Optional[Dict[StrictStr, Any]] = None, + _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0, + ) -> RESTResponseType: + """remove vcell identity mapping + + + :param user_name: (required) + :type user_name: str + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + :type _request_timeout: int, tuple(int, int), optional + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the + authentication in the spec for a single request. + :type _request_auth: dict, optional + :param _content_type: force content-type for the request. + :type _content_type: str, Optional + :param _headers: set to override the headers for a single + request; this effectively ignores the headers + in the spec for a single request. + :type _headers: dict, optional + :param _host_index: set to override the host_index for a single + request; this effectively ignores the host_index + in the spec for a single request. + :type _host_index: int, optional + :return: Returns the result object. + """ # noqa: E501 + + _param = self._unmap_user_serialize( + user_name=user_name, + _request_auth=_request_auth, + _content_type=_content_type, + _headers=_headers, + _host_index=_host_index + ) + + _response_types_map: Dict[str, Optional[str]] = { + '200': "bool", + '401': None, + '403': None + + } + response_data = self.api_client.call_api( + *_param, + _request_timeout=_request_timeout + ) + return response_data.response + + + def _unmap_user_serialize( + self, + user_name, + _request_auth, + _content_type, + _headers, + _host_index, + ) -> Tuple: + + _host = None + + _collection_formats: Dict[str, str] = { + + } + + _path_params: Dict[str, str] = {} + _query_params: List[Tuple[str, str]] = [] + _header_params: Dict[str, Optional[str]] = _headers or {} + _form_params: List[Tuple[str, str]] = [] + _files: Dict[str, str] = {} + _body_params: Optional[bytes] = None + + # process the path parameters + if user_name is not None: + _path_params['userName'] = user_name + # process the query parameters + # process the header parameters + # process the form parameters + # process the body parameter + + + # set the HTTP header `Accept` + _header_params['Accept'] = self.api_client.select_header_accept( + [ + 'application/json' + ] + ) + + + # authentication setting + _auth_settings: List[str] = [ + 'openId' + ] + + return self.api_client.param_serialize( + method='PUT', + resource_path='/api/v1/users/unmapUser/{userName}', + path_params=_path_params, + query_params=_query_params, + header_params=_header_params, + body=_body_params, + post_params=_form_params, + files=_files, + auth_settings=_auth_settings, + collection_formats=_collection_formats, + _host=_host, + _request_auth=_request_auth + ) + + diff --git a/vcell_api_client/api_client.py b/vcell_api_client/api_client.py new file mode 100644 index 0000000..85cbb5e --- /dev/null +++ b/vcell_api_client/api_client.py @@ -0,0 +1,742 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import atexit +import datetime +from dateutil.parser import parse +import json +import mimetypes +import os +import re +import tempfile + +from urllib.parse import quote +from typing import Tuple, Optional, List + +from vcell_api_client.configuration import Configuration +from vcell_api_client.api_response import ApiResponse +import vcell_api_client.models +from vcell_api_client import rest +from vcell_api_client.exceptions import ( + ApiValueError, + ApiException, + BadRequestException, + UnauthorizedException, + ForbiddenException, + NotFoundException, + ServiceException +) + + +class ApiClient: + """Generic API client for OpenAPI client library builds. + + OpenAPI generic API client. This client handles the client- + server communication, and is invariant across implementations. Specifics of + the methods and models for each application are generated from the OpenAPI + templates. + + :param configuration: .Configuration object for this client + :param header_name: a header to pass when making calls to the API. + :param header_value: a header value to pass when making calls to + the API. + :param cookie: a cookie to include in the header when making calls + to the API + """ + + PRIMITIVE_TYPES = (float, bool, bytes, str, int) + NATIVE_TYPES_MAPPING = { + 'int': int, + 'long': int, # TODO remove as only py3 is supported? + 'float': float, + 'str': str, + 'bool': bool, + 'date': datetime.date, + 'datetime': datetime.datetime, + 'object': object, + } + _pool = None + + def __init__( + self, + configuration=None, + header_name=None, + header_value=None, + cookie=None + ) -> None: + # use default configuration if none is provided + if configuration is None: + configuration = Configuration.get_default() + self.configuration = configuration + + self.rest_client = rest.RESTClientObject(configuration) + self.default_headers = {} + if header_name is not None: + self.default_headers[header_name] = header_value + self.cookie = cookie + # Set default User-Agent. + self.user_agent = 'OpenAPI-Generator/0.1.0/python' + self.client_side_validation = configuration.client_side_validation + + def __enter__(self): + return self + + def __exit__(self, exc_type, exc_value, traceback): + pass + + @property + def user_agent(self): + """User agent for this API client""" + return self.default_headers['User-Agent'] + + @user_agent.setter + def user_agent(self, value): + self.default_headers['User-Agent'] = value + + def set_default_header(self, header_name, header_value): + self.default_headers[header_name] = header_value + + + _default = None + + @classmethod + def get_default(cls): + """Return new instance of ApiClient. + + This method returns newly created, based on default constructor, + object of ApiClient class or returns a copy of default + ApiClient. + + :return: The ApiClient object. + """ + if cls._default is None: + cls._default = ApiClient() + return cls._default + + @classmethod + def set_default(cls, default): + """Set default instance of ApiClient. + + It stores default ApiClient. + + :param default: object of ApiClient. + """ + cls._default = default + + def param_serialize( + self, + method, + resource_path, + path_params=None, + query_params=None, + header_params=None, + body=None, + post_params=None, + files=None, auth_settings=None, + collection_formats=None, + _host=None, + _request_auth=None + ) -> Tuple: + + """Builds the HTTP request params needed by the request. + :param method: Method to call. + :param resource_path: Path to method endpoint. + :param path_params: Path parameters in the url. + :param query_params: Query parameters in the url. + :param header_params: Header parameters to be + placed in the request header. + :param body: Request body. + :param post_params dict: Request post form parameters, + for `application/x-www-form-urlencoded`, `multipart/form-data`. + :param auth_settings list: Auth Settings names for the request. + :param files dict: key -> filename, value -> filepath, + for `multipart/form-data`. + :param collection_formats: dict of collection formats for path, query, + header, and post parameters. + :param _request_auth: set to override the auth_settings for an a single + request; this effectively ignores the authentication + in the spec for a single request. + :return: tuple of form (path, http_method, query_params, header_params, + body, post_params, files) + """ + + config = self.configuration + + # header parameters + header_params = header_params or {} + header_params.update(self.default_headers) + if self.cookie: + header_params['Cookie'] = self.cookie + if header_params: + header_params = self.sanitize_for_serialization(header_params) + header_params = dict( + self.parameters_to_tuples(header_params,collection_formats) + ) + + # path parameters + if path_params: + path_params = self.sanitize_for_serialization(path_params) + path_params = self.parameters_to_tuples( + path_params, + collection_formats + ) + for k, v in path_params: + # specified safe chars, encode everything + resource_path = resource_path.replace( + '{%s}' % k, + quote(str(v), safe=config.safe_chars_for_path_param) + ) + + # post parameters + if post_params or files: + post_params = post_params if post_params else [] + post_params = self.sanitize_for_serialization(post_params) + post_params = self.parameters_to_tuples( + post_params, + collection_formats + ) + post_params.extend(self.files_parameters(files)) + + # auth setting + self.update_params_for_auth( + header_params, + query_params, + auth_settings, + resource_path, + method, + body, + request_auth=_request_auth + ) + + # body + if body: + body = self.sanitize_for_serialization(body) + + # request url + if _host is None: + url = self.configuration.host + resource_path + else: + # use server/host defined in path or operation instead + url = _host + resource_path + + # query parameters + if query_params: + query_params = self.sanitize_for_serialization(query_params) + url_query = self.parameters_to_url_query( + query_params, + collection_formats + ) + url += "?" + url_query + + return method, url, header_params, body, post_params + + + def call_api( + self, + method, + url, + header_params=None, + body=None, + post_params=None, + _request_timeout=None + ) -> rest.RESTResponse: + """Makes the HTTP request (synchronous) + :param method: Method to call. + :param url: Path to method endpoint. + :param header_params: Header parameters to be + placed in the request header. + :param body: Request body. + :param post_params dict: Request post form parameters, + for `application/x-www-form-urlencoded`, `multipart/form-data`. + :param _request_timeout: timeout setting for this request. + :return: RESTResponse + """ + + try: + # perform request and return response + response_data = self.rest_client.request( + method, url, + headers=header_params, + body=body, post_params=post_params, + _request_timeout=_request_timeout + ) + + except ApiException as e: + if e.body: + e.body = e.body.decode('utf-8') + raise e + + return response_data + + def response_deserialize( + self, + response_data=None, + response_types_map=None + ) -> ApiResponse: + """Deserializes response into an object. + :param response_data: RESTResponse object to be deserialized. + :param response_types_map: dict of response types. + :return: ApiResponse + """ + + + response_type = response_types_map.get(str(response_data.status), None) + if not response_type and isinstance(response_data.status, int) and 100 <= response_data.status <= 599: + # if not found, look for '1XX', '2XX', etc. + response_type = response_types_map.get(str(response_data.status)[0] + "XX", None) + + if not 200 <= response_data.status <= 299: + if response_data.status == 400: + raise BadRequestException(http_resp=response_data) + + if response_data.status == 401: + raise UnauthorizedException(http_resp=response_data) + + if response_data.status == 403: + raise ForbiddenException(http_resp=response_data) + + if response_data.status == 404: + raise NotFoundException(http_resp=response_data) + + if 500 <= response_data.status <= 599: + raise ServiceException(http_resp=response_data) + raise ApiException(http_resp=response_data) + + # deserialize response data + + if response_type == "bytearray": + return_data = response_data.data + elif response_type is None: + return_data = None + elif response_type == "file": + return_data = self.__deserialize_file(response_data) + else: + match = None + content_type = response_data.getheader('content-type') + if content_type is not None: + match = re.search(r"charset=([a-zA-Z\-\d]+)[\s;]?", content_type) + encoding = match.group(1) if match else "utf-8" + response_text = response_data.data.decode(encoding) + return_data = self.deserialize(response_text, response_type) + + return ApiResponse( + status_code = response_data.status, + data = return_data, + headers = response_data.getheaders(), + raw_data = response_data.data + ) + + def sanitize_for_serialization(self, obj): + """Builds a JSON POST object. + + If obj is None, return None. + If obj is str, int, long, float, bool, return directly. + If obj is datetime.datetime, datetime.date + convert to string in iso8601 format. + If obj is list, sanitize each element in the list. + If obj is dict, return the dict. + If obj is OpenAPI model, return the properties dict. + + :param obj: The data to serialize. + :return: The serialized form of data. + """ + if obj is None: + return None + elif isinstance(obj, self.PRIMITIVE_TYPES): + return obj + elif isinstance(obj, list): + return [ + self.sanitize_for_serialization(sub_obj) for sub_obj in obj + ] + elif isinstance(obj, tuple): + return tuple( + self.sanitize_for_serialization(sub_obj) for sub_obj in obj + ) + elif isinstance(obj, (datetime.datetime, datetime.date)): + return obj.isoformat() + + elif isinstance(obj, dict): + obj_dict = obj + else: + # Convert model obj to dict except + # attributes `openapi_types`, `attribute_map` + # and attributes which value is not None. + # Convert attribute name to json key in + # model definition for request. + obj_dict = obj.to_dict() + + return { + key: self.sanitize_for_serialization(val) + for key, val in obj_dict.items() + } + + def deserialize(self, response_text, response_type): + """Deserializes response into an object. + + :param response: RESTResponse object to be deserialized. + :param response_type: class literal for + deserialized object, or string of class name. + + :return: deserialized object. + """ + + # fetch data from response object + try: + data = json.loads(response_text) + except ValueError: + data = response_text + + return self.__deserialize(data, response_type) + + def __deserialize(self, data, klass): + """Deserializes dict, list, str into an object. + + :param data: dict, list or str. + :param klass: class literal, or string of class name. + + :return: object. + """ + if data is None: + return None + + if isinstance(klass, str): + if klass.startswith('List['): + sub_kls = re.match(r'List\[(.*)]', klass).group(1) + return [self.__deserialize(sub_data, sub_kls) + for sub_data in data] + + if klass.startswith('Dict['): + sub_kls = re.match(r'Dict\[([^,]*), (.*)]', klass).group(2) + return {k: self.__deserialize(v, sub_kls) + for k, v in data.items()} + + # convert str to class + if klass in self.NATIVE_TYPES_MAPPING: + klass = self.NATIVE_TYPES_MAPPING[klass] + else: + klass = getattr(vcell_api_client.models, klass) + + if klass in self.PRIMITIVE_TYPES: + return self.__deserialize_primitive(data, klass) + elif klass == object: + return self.__deserialize_object(data) + elif klass == datetime.date: + return self.__deserialize_date(data) + elif klass == datetime.datetime: + return self.__deserialize_datetime(data) + else: + return self.__deserialize_model(data, klass) + + def parameters_to_tuples(self, params, collection_formats): + """Get parameters as list of tuples, formatting collections. + + :param params: Parameters as dict or list of two-tuples + :param dict collection_formats: Parameter collection formats + :return: Parameters as list of tuples, collections formatted + """ + new_params = [] + if collection_formats is None: + collection_formats = {} + for k, v in params.items() if isinstance(params, dict) else params: + if k in collection_formats: + collection_format = collection_formats[k] + if collection_format == 'multi': + new_params.extend((k, value) for value in v) + else: + if collection_format == 'ssv': + delimiter = ' ' + elif collection_format == 'tsv': + delimiter = '\t' + elif collection_format == 'pipes': + delimiter = '|' + else: # csv is the default + delimiter = ',' + new_params.append( + (k, delimiter.join(str(value) for value in v))) + else: + new_params.append((k, v)) + return new_params + + def parameters_to_url_query(self, params, collection_formats): + """Get parameters as list of tuples, formatting collections. + + :param params: Parameters as dict or list of two-tuples + :param dict collection_formats: Parameter collection formats + :return: URL query string (e.g. a=Hello%20World&b=123) + """ + new_params = [] + if collection_formats is None: + collection_formats = {} + for k, v in params.items() if isinstance(params, dict) else params: + if isinstance(v, bool): + v = str(v).lower() + if isinstance(v, (int, float)): + v = str(v) + if isinstance(v, dict): + v = json.dumps(v) + + if k in collection_formats: + collection_format = collection_formats[k] + if collection_format == 'multi': + new_params.extend((k, value) for value in v) + else: + if collection_format == 'ssv': + delimiter = ' ' + elif collection_format == 'tsv': + delimiter = '\t' + elif collection_format == 'pipes': + delimiter = '|' + else: # csv is the default + delimiter = ',' + new_params.append( + (k, delimiter.join(quote(str(value)) for value in v)) + ) + else: + new_params.append((k, quote(str(v)))) + + return "&".join(["=".join(item) for item in new_params]) + + def files_parameters(self, files=None): + """Builds form parameters. + + :param files: File parameters. + :return: Form parameters with files. + """ + params = [] + + if files: + for k, v in files.items(): + if not v: + continue + file_names = v if type(v) is list else [v] + for n in file_names: + with open(n, 'rb') as f: + filename = os.path.basename(f.name) + filedata = f.read() + mimetype = ( + mimetypes.guess_type(filename)[0] + or 'application/octet-stream' + ) + params.append( + tuple([k, tuple([filename, filedata, mimetype])]) + ) + + return params + + def select_header_accept(self, accepts: List[str]) -> Optional[str]: + """Returns `Accept` based on an array of accepts provided. + + :param accepts: List of headers. + :return: Accept (e.g. application/json). + """ + if not accepts: + return None + + for accept in accepts: + if re.search('json', accept, re.IGNORECASE): + return accept + + return accepts[0] + + def select_header_content_type(self, content_types): + """Returns `Content-Type` based on an array of content_types provided. + + :param content_types: List of content-types. + :return: Content-Type (e.g. application/json). + """ + if not content_types: + return None + + for content_type in content_types: + if re.search('json', content_type, re.IGNORECASE): + return content_type + + return content_types[0] + + def update_params_for_auth( + self, + headers, + queries, + auth_settings, + resource_path, + method, + body, + request_auth=None + ) -> None: + """Updates header and query params based on authentication setting. + + :param headers: Header parameters dict to be updated. + :param queries: Query parameters tuple list to be updated. + :param auth_settings: Authentication setting identifiers list. + :resource_path: A string representation of the HTTP request resource path. + :method: A string representation of the HTTP request method. + :body: A object representing the body of the HTTP request. + The object type is the return value of sanitize_for_serialization(). + :param request_auth: if set, the provided settings will + override the token in the configuration. + """ + if not auth_settings: + return + + if request_auth: + self._apply_auth_params( + headers, + queries, + resource_path, + method, + body, + request_auth + ) + else: + for auth in auth_settings: + auth_setting = self.configuration.auth_settings().get(auth) + if auth_setting: + self._apply_auth_params( + headers, + queries, + resource_path, + method, + body, + auth_setting + ) + + def _apply_auth_params( + self, + headers, + queries, + resource_path, + method, + body, + auth_setting + ) -> None: + """Updates the request parameters based on a single auth_setting + + :param headers: Header parameters dict to be updated. + :param queries: Query parameters tuple list to be updated. + :resource_path: A string representation of the HTTP request resource path. + :method: A string representation of the HTTP request method. + :body: A object representing the body of the HTTP request. + The object type is the return value of sanitize_for_serialization(). + :param auth_setting: auth settings for the endpoint + """ + if auth_setting['in'] == 'cookie': + headers['Cookie'] = auth_setting['value'] + elif auth_setting['in'] == 'header': + if auth_setting['type'] != 'http-signature': + headers[auth_setting['key']] = auth_setting['value'] + elif auth_setting['in'] == 'query': + queries.append((auth_setting['key'], auth_setting['value'])) + else: + raise ApiValueError( + 'Authentication token must be in `query` or `header`' + ) + + def __deserialize_file(self, response): + """Deserializes body to file + + Saves response body into a file in a temporary folder, + using the filename from the `Content-Disposition` header if provided. + + handle file downloading + save response body into a tmp file and return the instance + + :param response: RESTResponse. + :return: file path. + """ + fd, path = tempfile.mkstemp(dir=self.configuration.temp_folder_path) + os.close(fd) + os.remove(path) + + content_disposition = response.getheader("Content-Disposition") + if content_disposition: + filename = re.search( + r'filename=[\'"]?([^\'"\s]+)[\'"]?', + content_disposition + ).group(1) + path = os.path.join(os.path.dirname(path), filename) + + with open(path, "wb") as f: + f.write(response.data) + + return path + + def __deserialize_primitive(self, data, klass): + """Deserializes string to primitive type. + + :param data: str. + :param klass: class literal. + + :return: int, long, float, str, bool. + """ + try: + return klass(data) + except UnicodeEncodeError: + return str(data) + except TypeError: + return data + + def __deserialize_object(self, value): + """Return an original value. + + :return: object. + """ + return value + + def __deserialize_date(self, string): + """Deserializes string to date. + + :param string: str. + :return: date. + """ + try: + return parse(string).date() + except ImportError: + return string + except ValueError: + raise rest.ApiException( + status=0, + reason="Failed to parse `{0}` as date object".format(string) + ) + + def __deserialize_datetime(self, string): + """Deserializes string to datetime. + + The string should be in iso8601 datetime format. + + :param string: str. + :return: datetime. + """ + try: + return parse(string) + except ImportError: + return string + except ValueError: + raise rest.ApiException( + status=0, + reason=( + "Failed to parse `{0}` as datetime object" + .format(string) + ) + ) + + def __deserialize_model(self, data, klass): + """Deserializes list or dict to model. + + :param data: dict, list. + :param klass: class literal. + :return: model object. + """ + + return klass.from_dict(data) diff --git a/vcell_api_client/api_response.py b/vcell_api_client/api_response.py new file mode 100644 index 0000000..2ac1ada --- /dev/null +++ b/vcell_api_client/api_response.py @@ -0,0 +1,21 @@ +"""API response object.""" + +from __future__ import annotations +from typing import Any, Dict, Optional, Generic, TypeVar +from pydantic import Field, StrictInt, StrictStr, StrictBytes, BaseModel + +T = TypeVar("T") + +class ApiResponse(BaseModel, Generic[T]): + """ + API response object + """ + + status_code: StrictInt = Field(description="HTTP status code") + headers: Optional[Dict[StrictStr, StrictStr]] = Field(None, description="HTTP headers") + data: T = Field(description="Deserialized data given the data type") + raw_data: StrictBytes = Field(description="Raw data (HTTP response body)") + + model_config = { + "arbitrary_types_allowed": True + } diff --git a/vcell_api_client/configuration.py b/vcell_api_client/configuration.py new file mode 100644 index 0000000..8a8af3d --- /dev/null +++ b/vcell_api_client/configuration.py @@ -0,0 +1,428 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import copy +import logging +import sys +import urllib3 + +import http.client as httplib + +JSON_SCHEMA_VALIDATION_KEYWORDS = { + 'multipleOf', 'maximum', 'exclusiveMaximum', + 'minimum', 'exclusiveMinimum', 'maxLength', + 'minLength', 'pattern', 'maxItems', 'minItems' +} + +class Configuration: + """This class contains various settings of the API client. + + :param host: Base url. + :param api_key: Dict to store API key(s). + Each entry in the dict specifies an API key. + The dict key is the name of the security scheme in the OAS specification. + The dict value is the API key secret. + :param api_key_prefix: Dict to store API prefix (e.g. Bearer). + The dict key is the name of the security scheme in the OAS specification. + The dict value is an API key prefix when generating the auth data. + :param username: Username for HTTP basic authentication. + :param password: Password for HTTP basic authentication. + :param access_token: Access token. + :param server_index: Index to servers configuration. + :param server_variables: Mapping with string values to replace variables in + templated server configuration. The validation of enums is performed for + variables with defined enum values before. + :param server_operation_index: Mapping from operation ID to an index to server + configuration. + :param server_operation_variables: Mapping from operation ID to a mapping with + string values to replace variables in templated server configuration. + The validation of enums is performed for variables with defined enum + values before. + :param ssl_ca_cert: str - the path to a file of concatenated CA certificates + in PEM format. + + :Example: + """ + + _default = None + + def __init__(self, host=None, + api_key=None, api_key_prefix=None, + username=None, password=None, + access_token=None, + server_index=None, server_variables=None, + server_operation_index=None, server_operation_variables=None, + ssl_ca_cert=None, + ) -> None: + """Constructor + """ + self._base_path = "https://vcellapi-test.cam.uchc.edu" if host is None else host + """Default Base url + """ + self.server_index = 0 if server_index is None and host is None else server_index + self.server_operation_index = server_operation_index or {} + """Default server index + """ + self.server_variables = server_variables or {} + self.server_operation_variables = server_operation_variables or {} + """Default server variables + """ + self.temp_folder_path = None + """Temp file folder for downloading files + """ + # Authentication Settings + self.api_key = {} + if api_key: + self.api_key = api_key + """dict to store API key(s) + """ + self.api_key_prefix = {} + if api_key_prefix: + self.api_key_prefix = api_key_prefix + """dict to store API prefix (e.g. Bearer) + """ + self.refresh_api_key_hook = None + """function hook to refresh API key if expired + """ + self.username = username + """Username for HTTP basic authentication + """ + self.password = password + """Password for HTTP basic authentication + """ + self.access_token = access_token + """Access token + """ + self.logger = {} + """Logging Settings + """ + self.logger["package_logger"] = logging.getLogger("vcell_api_client") + self.logger["urllib3_logger"] = logging.getLogger("urllib3") + self.logger_format = '%(asctime)s %(levelname)s %(message)s' + """Log format + """ + self.logger_stream_handler = None + """Log stream handler + """ + self.logger_file_handler = None + """Log file handler + """ + self.logger_file = None + """Debug file location + """ + self.debug = False + """Debug switch + """ + + self.verify_ssl = True + """SSL/TLS verification + Set this to false to skip verifying SSL certificate when calling API + from https server. + """ + self.ssl_ca_cert = ssl_ca_cert + """Set this to customize the certificate file to verify the peer. + """ + self.cert_file = None + """client certificate file + """ + self.key_file = None + """client key file + """ + self.assert_hostname = None + """Set this to True/False to enable/disable SSL hostname verification. + """ + self.tls_server_name = None + """SSL/TLS Server Name Indication (SNI) + Set this to the SNI value expected by the server. + """ + + + self.proxy = None + """Proxy URL + """ + self.proxy_headers = None + """Proxy headers + """ + self.safe_chars_for_path_param = '' + """Safe chars for path_param + """ + self.retries = None + """Adding retries to override urllib3 default value 3 + """ + # Enable client side validation + self.client_side_validation = True + + self.socket_options = None + """Options to pass down to the underlying urllib3 socket + """ + + self.datetime_format = "%Y-%m-%dT%H:%M:%S.%f%z" + """datetime format + """ + + self.date_format = "%Y-%m-%d" + """date format + """ + + def __deepcopy__(self, memo): + cls = self.__class__ + result = cls.__new__(cls) + memo[id(self)] = result + for k, v in self.__dict__.items(): + if k not in ('logger', 'logger_file_handler'): + setattr(result, k, copy.deepcopy(v, memo)) + # shallow copy of loggers + result.logger = copy.copy(self.logger) + # use setters to configure loggers + result.logger_file = self.logger_file + result.debug = self.debug + return result + + def __setattr__(self, name, value): + object.__setattr__(self, name, value) + + @classmethod + def set_default(cls, default): + """Set default instance of configuration. + + It stores default configuration, which can be + returned by get_default_copy method. + + :param default: object of Configuration + """ + cls._default = default + + @classmethod + def get_default_copy(cls): + """Deprecated. Please use `get_default` instead. + + Deprecated. Please use `get_default` instead. + + :return: The configuration object. + """ + return cls.get_default() + + @classmethod + def get_default(cls): + """Return the default configuration. + + This method returns newly created, based on default constructor, + object of Configuration class or returns a copy of default + configuration. + + :return: The configuration object. + """ + if cls._default is None: + cls._default = Configuration() + return cls._default + + @property + def logger_file(self): + """The logger file. + + If the logger_file is None, then add stream handler and remove file + handler. Otherwise, add file handler and remove stream handler. + + :param value: The logger_file path. + :type: str + """ + return self.__logger_file + + @logger_file.setter + def logger_file(self, value): + """The logger file. + + If the logger_file is None, then add stream handler and remove file + handler. Otherwise, add file handler and remove stream handler. + + :param value: The logger_file path. + :type: str + """ + self.__logger_file = value + if self.__logger_file: + # If set logging file, + # then add file handler and remove stream handler. + self.logger_file_handler = logging.FileHandler(self.__logger_file) + self.logger_file_handler.setFormatter(self.logger_formatter) + for _, logger in self.logger.items(): + logger.addHandler(self.logger_file_handler) + + @property + def debug(self): + """Debug status + + :param value: The debug status, True or False. + :type: bool + """ + return self.__debug + + @debug.setter + def debug(self, value): + """Debug status + + :param value: The debug status, True or False. + :type: bool + """ + self.__debug = value + if self.__debug: + # if debug status is True, turn on debug logging + for _, logger in self.logger.items(): + logger.setLevel(logging.DEBUG) + # turn on httplib debug + httplib.HTTPConnection.debuglevel = 1 + else: + # if debug status is False, turn off debug logging, + # setting log level to default `logging.WARNING` + for _, logger in self.logger.items(): + logger.setLevel(logging.WARNING) + # turn off httplib debug + httplib.HTTPConnection.debuglevel = 0 + + @property + def logger_format(self): + """The logger format. + + The logger_formatter will be updated when sets logger_format. + + :param value: The format string. + :type: str + """ + return self.__logger_format + + @logger_format.setter + def logger_format(self, value): + """The logger format. + + The logger_formatter will be updated when sets logger_format. + + :param value: The format string. + :type: str + """ + self.__logger_format = value + self.logger_formatter = logging.Formatter(self.__logger_format) + + def get_api_key_with_prefix(self, identifier, alias=None): + """Gets API key (with prefix if set). + + :param identifier: The identifier of apiKey. + :param alias: The alternative identifier of apiKey. + :return: The token for api key authentication. + """ + if self.refresh_api_key_hook is not None: + self.refresh_api_key_hook(self) + key = self.api_key.get(identifier, self.api_key.get(alias) if alias is not None else None) + if key: + prefix = self.api_key_prefix.get(identifier) + if prefix: + return "%s %s" % (prefix, key) + else: + return key + + def get_basic_auth_token(self): + """Gets HTTP basic authentication header (string). + + :return: The token for basic HTTP authentication. + """ + username = "" + if self.username is not None: + username = self.username + password = "" + if self.password is not None: + password = self.password + return urllib3.util.make_headers( + basic_auth=username + ':' + password + ).get('authorization') + + def auth_settings(self): + """Gets Auth Settings dict for api client. + + :return: The Auth Settings information dict. + """ + auth = {} + return auth + + def to_debug_report(self): + """Gets the essential information for debugging. + + :return: The report for debugging. + """ + return "Python SDK Debug Report:\n"\ + "OS: {env}\n"\ + "Python Version: {pyversion}\n"\ + "Version of the API: 1.0.1\n"\ + "SDK Package Version: 0.1.0".\ + format(env=sys.platform, pyversion=sys.version) + + def get_host_settings(self): + """Gets an array of host settings + + :return: An array of host settings + """ + return [ + { + 'url': "https://vcellapi-test.cam.uchc.edu", + 'description': "No description provided", + } + ] + + def get_host_from_settings(self, index, variables=None, servers=None): + """Gets host URL based on the index and variables + :param index: array index of the host settings + :param variables: hash of variable and the corresponding value + :param servers: an array of host settings or None + :return: URL based on host settings + """ + if index is None: + return self._base_path + + variables = {} if variables is None else variables + servers = self.get_host_settings() if servers is None else servers + + try: + server = servers[index] + except IndexError: + raise ValueError( + "Invalid index {0} when selecting the host settings. " + "Must be less than {1}".format(index, len(servers))) + + url = server['url'] + + # go through variables and replace placeholders + for variable_name, variable in server.get('variables', {}).items(): + used_value = variables.get( + variable_name, variable['default_value']) + + if 'enum_values' in variable \ + and used_value not in variable['enum_values']: + raise ValueError( + "The variable `{0}` in the host URL has invalid value " + "{1}. Must be {2}.".format( + variable_name, variables[variable_name], + variable['enum_values'])) + + url = url.replace("{" + variable_name + "}", used_value) + + return url + + @property + def host(self): + """Return generated host.""" + return self.get_host_from_settings(self.server_index, variables=self.server_variables) + + @host.setter + def host(self, value): + """Fix base path.""" + self._base_path = value + self.server_index = None diff --git a/vcell_api_client/exceptions.py b/vcell_api_client/exceptions.py new file mode 100644 index 0000000..58eff1b --- /dev/null +++ b/vcell_api_client/exceptions.py @@ -0,0 +1,167 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +class OpenApiException(Exception): + """The base exception class for all OpenAPIExceptions""" + + +class ApiTypeError(OpenApiException, TypeError): + def __init__(self, msg, path_to_item=None, valid_classes=None, + key_type=None) -> None: + """ Raises an exception for TypeErrors + + Args: + msg (str): the exception message + + Keyword Args: + path_to_item (list): a list of keys an indices to get to the + current_item + None if unset + valid_classes (tuple): the primitive classes that current item + should be an instance of + None if unset + key_type (bool): False if our value is a value in a dict + True if it is a key in a dict + False if our item is an item in a list + None if unset + """ + self.path_to_item = path_to_item + self.valid_classes = valid_classes + self.key_type = key_type + full_msg = msg + if path_to_item: + full_msg = "{0} at {1}".format(msg, render_path(path_to_item)) + super(ApiTypeError, self).__init__(full_msg) + + +class ApiValueError(OpenApiException, ValueError): + def __init__(self, msg, path_to_item=None) -> None: + """ + Args: + msg (str): the exception message + + Keyword Args: + path_to_item (list) the path to the exception in the + received_data dict. None if unset + """ + + self.path_to_item = path_to_item + full_msg = msg + if path_to_item: + full_msg = "{0} at {1}".format(msg, render_path(path_to_item)) + super(ApiValueError, self).__init__(full_msg) + + +class ApiAttributeError(OpenApiException, AttributeError): + def __init__(self, msg, path_to_item=None) -> None: + """ + Raised when an attribute reference or assignment fails. + + Args: + msg (str): the exception message + + Keyword Args: + path_to_item (None/list) the path to the exception in the + received_data dict + """ + self.path_to_item = path_to_item + full_msg = msg + if path_to_item: + full_msg = "{0} at {1}".format(msg, render_path(path_to_item)) + super(ApiAttributeError, self).__init__(full_msg) + + +class ApiKeyError(OpenApiException, KeyError): + def __init__(self, msg, path_to_item=None) -> None: + """ + Args: + msg (str): the exception message + + Keyword Args: + path_to_item (None/list) the path to the exception in the + received_data dict + """ + self.path_to_item = path_to_item + full_msg = msg + if path_to_item: + full_msg = "{0} at {1}".format(msg, render_path(path_to_item)) + super(ApiKeyError, self).__init__(full_msg) + + +class ApiException(OpenApiException): + + def __init__(self, status=None, reason=None, http_resp=None) -> None: + if http_resp: + self.status = http_resp.status + self.reason = http_resp.reason + self.body = http_resp.data.decode('utf-8') + self.headers = http_resp.getheaders() + else: + self.status = status + self.reason = reason + self.body = None + self.headers = None + + def __str__(self): + """Custom error messages for exception""" + error_message = "({0})\n"\ + "Reason: {1}\n".format(self.status, self.reason) + if self.headers: + error_message += "HTTP response headers: {0}\n".format( + self.headers) + + if self.body: + error_message += "HTTP response body: {0}\n".format(self.body) + + return error_message + +class BadRequestException(ApiException): + + def __init__(self, status=None, reason=None, http_resp=None) -> None: + super(BadRequestException, self).__init__(status, reason, http_resp) + +class NotFoundException(ApiException): + + def __init__(self, status=None, reason=None, http_resp=None) -> None: + super(NotFoundException, self).__init__(status, reason, http_resp) + + +class UnauthorizedException(ApiException): + + def __init__(self, status=None, reason=None, http_resp=None) -> None: + super(UnauthorizedException, self).__init__(status, reason, http_resp) + + +class ForbiddenException(ApiException): + + def __init__(self, status=None, reason=None, http_resp=None) -> None: + super(ForbiddenException, self).__init__(status, reason, http_resp) + + +class ServiceException(ApiException): + + def __init__(self, status=None, reason=None, http_resp=None) -> None: + super(ServiceException, self).__init__(status, reason, http_resp) + + +def render_path(path_to_item): + """Returns a string representation of a path""" + result = "" + for pth in path_to_item: + if isinstance(pth, int): + result += "[{0}]".format(pth) + else: + result += "['{0}']".format(pth) + return result diff --git a/vcell_api_client/models/__init__.py b/vcell_api_client/models/__init__.py new file mode 100644 index 0000000..3e59b2d --- /dev/null +++ b/vcell_api_client/models/__init__.py @@ -0,0 +1,28 @@ +# coding: utf-8 + +# flake8: noqa +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +# import models into model package +from vcell_api_client.models.acces_token_representation_record import AccesTokenRepresentationRecord +from vcell_api_client.models.bio_model import BioModel +from vcell_api_client.models.biomodel_ref import BiomodelRef +from vcell_api_client.models.hello_world_message import HelloWorldMessage +from vcell_api_client.models.identity import Identity +from vcell_api_client.models.mathmodel_ref import MathmodelRef +from vcell_api_client.models.publication import Publication +from vcell_api_client.models.simulation import Simulation +from vcell_api_client.models.user_identity_json_safe import UserIdentityJSONSafe +from vcell_api_client.models.user_login_info_for_mapping import UserLoginInfoForMapping +from vcell_api_client.models.user_registration_info import UserRegistrationInfo diff --git a/vcell_api_client/models/acces_token_representation_record.py b/vcell_api_client/models/acces_token_representation_record.py new file mode 100644 index 0000000..dd6d7f6 --- /dev/null +++ b/vcell_api_client/models/acces_token_representation_record.py @@ -0,0 +1,102 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictInt, StrictStr +from pydantic import Field +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class AccesTokenRepresentationRecord(BaseModel): + """ + AccesTokenRepresentationRecord + """ # noqa: E501 + token: Optional[StrictStr] = None + creation_date_seconds: Optional[StrictInt] = Field(default=None, alias="creationDateSeconds") + expire_date_seconds: Optional[StrictInt] = Field(default=None, alias="expireDateSeconds") + user_id: Optional[StrictStr] = Field(default=None, alias="userId") + user_key: Optional[StrictStr] = Field(default=None, alias="userKey") + __properties: ClassVar[List[str]] = ["token", "creationDateSeconds", "expireDateSeconds", "userId", "userKey"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of AccesTokenRepresentationRecord from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of AccesTokenRepresentationRecord from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in AccesTokenRepresentationRecord) in the input: " + _key) + + _obj = cls.model_validate({ + "token": obj.get("token"), + "creationDateSeconds": obj.get("creationDateSeconds"), + "expireDateSeconds": obj.get("expireDateSeconds"), + "userId": obj.get("userId"), + "userKey": obj.get("userKey") + }) + return _obj + + diff --git a/vcell_api_client/models/bio_model.py b/vcell_api_client/models/bio_model.py new file mode 100644 index 0000000..70eadb6 --- /dev/null +++ b/vcell_api_client/models/bio_model.py @@ -0,0 +1,124 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional, Union +from pydantic import BaseModel, StrictInt, StrictStr +from pydantic import Field +from vcell_api_client.models.simulation import Simulation +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class BioModel(BaseModel): + """ + BioModel + """ # noqa: E501 + bm_key: Optional[StrictStr] = Field(default=None, alias="bmKey") + name: Optional[StrictStr] = None + privacy: Optional[StrictInt] = None + group_users: Optional[List[StrictStr]] = Field(default=None, alias="groupUsers") + saved_date: Optional[StrictInt] = Field(default=None, alias="savedDate") + annot: Optional[StrictStr] = None + branch_id: Optional[StrictStr] = Field(default=None, alias="branchID") + phys_model_key: Optional[StrictStr] = Field(default=None, alias="physModelKey") + owner_name: Optional[StrictStr] = Field(default=None, alias="ownerName") + owner_key: Optional[StrictStr] = Field(default=None, alias="ownerKey") + simulations: Optional[List[Simulation]] = None + applications: Optional[List[Union[str, Any]]] = None + __properties: ClassVar[List[str]] = ["bmKey", "name", "privacy", "groupUsers", "savedDate", "annot", "branchID", "physModelKey", "ownerName", "ownerKey", "simulations", "applications"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of BioModel from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + # override the default output from pydantic by calling `to_dict()` of each item in simulations (list) + _items = [] + if self.simulations: + for _item in self.simulations: + if _item: + _items.append(_item.to_dict()) + _dict['simulations'] = _items + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of BioModel from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in BioModel) in the input: " + _key) + + _obj = cls.model_validate({ + "bmKey": obj.get("bmKey"), + "name": obj.get("name"), + "privacy": obj.get("privacy"), + "groupUsers": obj.get("groupUsers"), + "savedDate": obj.get("savedDate"), + "annot": obj.get("annot"), + "branchID": obj.get("branchID"), + "physModelKey": obj.get("physModelKey"), + "ownerName": obj.get("ownerName"), + "ownerKey": obj.get("ownerKey"), + "simulations": [Simulation.from_dict(_item) for _item in obj.get("simulations")] if obj.get("simulations") is not None else None, + "applications": obj.get("applications") + }) + return _obj + + diff --git a/vcell_api_client/models/biomodel_ref.py b/vcell_api_client/models/biomodel_ref.py new file mode 100644 index 0000000..8c79608 --- /dev/null +++ b/vcell_api_client/models/biomodel_ref.py @@ -0,0 +1,102 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictInt, StrictStr +from pydantic import Field +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class BiomodelRef(BaseModel): + """ + BiomodelRef + """ # noqa: E501 + bm_key: Optional[StrictInt] = Field(default=None, alias="bmKey") + name: Optional[StrictStr] = None + owner_name: Optional[StrictStr] = Field(default=None, alias="ownerName") + owner_key: Optional[StrictInt] = Field(default=None, alias="ownerKey") + version_flag: Optional[StrictInt] = Field(default=None, alias="versionFlag") + __properties: ClassVar[List[str]] = ["bmKey", "name", "ownerName", "ownerKey", "versionFlag"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of BiomodelRef from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of BiomodelRef from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in BiomodelRef) in the input: " + _key) + + _obj = cls.model_validate({ + "bmKey": obj.get("bmKey"), + "name": obj.get("name"), + "ownerName": obj.get("ownerName"), + "ownerKey": obj.get("ownerKey"), + "versionFlag": obj.get("versionFlag") + }) + return _obj + + diff --git a/vcell_api_client/models/hello_world_message.py b/vcell_api_client/models/hello_world_message.py new file mode 100644 index 0000000..562f042 --- /dev/null +++ b/vcell_api_client/models/hello_world_message.py @@ -0,0 +1,93 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictStr +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class HelloWorldMessage(BaseModel): + """ + HelloWorldMessage + """ # noqa: E501 + message: Optional[StrictStr] = None + __properties: ClassVar[List[str]] = ["message"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of HelloWorldMessage from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of HelloWorldMessage from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in HelloWorldMessage) in the input: " + _key) + + _obj = cls.model_validate({ + "message": obj.get("message") + }) + return _obj + + diff --git a/vcell_api_client/models/identity.py b/vcell_api_client/models/identity.py new file mode 100644 index 0000000..c1edd2c --- /dev/null +++ b/vcell_api_client/models/identity.py @@ -0,0 +1,99 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictStr +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class Identity(BaseModel): + """ + Identity + """ # noqa: E501 + principal_name: Optional[StrictStr] = None + roles: Optional[List[StrictStr]] = None + attributes: Optional[List[StrictStr]] = None + credentials: Optional[List[StrictStr]] = None + __properties: ClassVar[List[str]] = ["principal_name", "roles", "attributes", "credentials"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of Identity from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of Identity from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in Identity) in the input: " + _key) + + _obj = cls.model_validate({ + "principal_name": obj.get("principal_name"), + "roles": obj.get("roles"), + "attributes": obj.get("attributes"), + "credentials": obj.get("credentials") + }) + return _obj + + diff --git a/vcell_api_client/models/mathmodel_ref.py b/vcell_api_client/models/mathmodel_ref.py new file mode 100644 index 0000000..8b26e13 --- /dev/null +++ b/vcell_api_client/models/mathmodel_ref.py @@ -0,0 +1,102 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictInt, StrictStr +from pydantic import Field +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class MathmodelRef(BaseModel): + """ + MathmodelRef + """ # noqa: E501 + mm_key: Optional[StrictInt] = Field(default=None, alias="mmKey") + name: Optional[StrictStr] = None + owner_name: Optional[StrictStr] = Field(default=None, alias="ownerName") + owner_key: Optional[StrictInt] = Field(default=None, alias="ownerKey") + version_flag: Optional[StrictInt] = Field(default=None, alias="versionFlag") + __properties: ClassVar[List[str]] = ["mmKey", "name", "ownerName", "ownerKey", "versionFlag"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of MathmodelRef from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of MathmodelRef from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in MathmodelRef) in the input: " + _key) + + _obj = cls.model_validate({ + "mmKey": obj.get("mmKey"), + "name": obj.get("name"), + "ownerName": obj.get("ownerName"), + "ownerKey": obj.get("ownerKey"), + "versionFlag": obj.get("versionFlag") + }) + return _obj + + diff --git a/vcell_api_client/models/publication.py b/vcell_api_client/models/publication.py new file mode 100644 index 0000000..bee95ef --- /dev/null +++ b/vcell_api_client/models/publication.py @@ -0,0 +1,134 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + +from datetime import date +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictInt, StrictStr +from pydantic import Field +from vcell_api_client.models.biomodel_ref import BiomodelRef +from vcell_api_client.models.mathmodel_ref import MathmodelRef +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class Publication(BaseModel): + """ + Publication + """ # noqa: E501 + pub_key: Optional[StrictInt] = Field(default=None, alias="pubKey") + title: Optional[StrictStr] = None + authors: Optional[List[StrictStr]] = None + year: Optional[StrictInt] = None + citation: Optional[StrictStr] = None + pubmedid: Optional[StrictStr] = None + doi: Optional[StrictStr] = None + endnoteid: Optional[StrictInt] = None + url: Optional[StrictStr] = None + wittid: Optional[StrictInt] = None + biomodel_refs: Optional[List[BiomodelRef]] = Field(default=None, alias="biomodelRefs") + mathmodel_refs: Optional[List[MathmodelRef]] = Field(default=None, alias="mathmodelRefs") + var_date: Optional[date] = Field(default=None, alias="date") + __properties: ClassVar[List[str]] = ["pubKey", "title", "authors", "year", "citation", "pubmedid", "doi", "endnoteid", "url", "wittid", "biomodelRefs", "mathmodelRefs", "date"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of Publication from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + # override the default output from pydantic by calling `to_dict()` of each item in biomodel_refs (list) + _items = [] + if self.biomodel_refs: + for _item in self.biomodel_refs: + if _item: + _items.append(_item.to_dict()) + _dict['biomodelRefs'] = _items + # override the default output from pydantic by calling `to_dict()` of each item in mathmodel_refs (list) + _items = [] + if self.mathmodel_refs: + for _item in self.mathmodel_refs: + if _item: + _items.append(_item.to_dict()) + _dict['mathmodelRefs'] = _items + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of Publication from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in Publication) in the input: " + _key) + + _obj = cls.model_validate({ + "pubKey": obj.get("pubKey"), + "title": obj.get("title"), + "authors": obj.get("authors"), + "year": obj.get("year"), + "citation": obj.get("citation"), + "pubmedid": obj.get("pubmedid"), + "doi": obj.get("doi"), + "endnoteid": obj.get("endnoteid"), + "url": obj.get("url"), + "wittid": obj.get("wittid"), + "biomodelRefs": [BiomodelRef.from_dict(_item) for _item in obj.get("biomodelRefs")] if obj.get("biomodelRefs") is not None else None, + "mathmodelRefs": [MathmodelRef.from_dict(_item) for _item in obj.get("mathmodelRefs")] if obj.get("mathmodelRefs") is not None else None, + "date": obj.get("date") + }) + return _obj + + diff --git a/vcell_api_client/models/simulation.py b/vcell_api_client/models/simulation.py new file mode 100644 index 0000000..420edfa --- /dev/null +++ b/vcell_api_client/models/simulation.py @@ -0,0 +1,93 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictStr +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class Simulation(BaseModel): + """ + Simulation + """ # noqa: E501 + name: Optional[StrictStr] = None + __properties: ClassVar[List[str]] = ["name"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of Simulation from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of Simulation from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in Simulation) in the input: " + _key) + + _obj = cls.model_validate({ + "name": obj.get("name") + }) + return _obj + + diff --git a/vcell_api_client/models/user_identity_json_safe.py b/vcell_api_client/models/user_identity_json_safe.py new file mode 100644 index 0000000..01213e5 --- /dev/null +++ b/vcell_api_client/models/user_identity_json_safe.py @@ -0,0 +1,100 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional, Union +from pydantic import BaseModel, StrictFloat, StrictInt, StrictStr +from pydantic import Field +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class UserIdentityJSONSafe(BaseModel): + """ + UserIdentityJSONSafe + """ # noqa: E501 + user_name: Optional[StrictStr] = Field(default=None, alias="userName") + id: Optional[Union[StrictFloat, StrictInt]] = None + subject: Optional[StrictStr] = None + insert_date: Optional[StrictStr] = Field(default=None, alias="insertDate") + __properties: ClassVar[List[str]] = ["userName", "id", "subject", "insertDate"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of UserIdentityJSONSafe from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of UserIdentityJSONSafe from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in UserIdentityJSONSafe) in the input: " + _key) + + _obj = cls.model_validate({ + "userName": obj.get("userName"), + "id": obj.get("id"), + "subject": obj.get("subject"), + "insertDate": obj.get("insertDate") + }) + return _obj + + diff --git a/vcell_api_client/models/user_login_info_for_mapping.py b/vcell_api_client/models/user_login_info_for_mapping.py new file mode 100644 index 0000000..dd9e93c --- /dev/null +++ b/vcell_api_client/models/user_login_info_for_mapping.py @@ -0,0 +1,96 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictStr +from pydantic import Field +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class UserLoginInfoForMapping(BaseModel): + """ + UserLoginInfoForMapping + """ # noqa: E501 + user_id: Optional[StrictStr] = Field(default=None, alias="userID") + password: Optional[StrictStr] = None + __properties: ClassVar[List[str]] = ["userID", "password"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of UserLoginInfoForMapping from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of UserLoginInfoForMapping from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in UserLoginInfoForMapping) in the input: " + _key) + + _obj = cls.model_validate({ + "userID": obj.get("userID"), + "password": obj.get("password") + }) + return _obj + + diff --git a/vcell_api_client/models/user_registration_info.py b/vcell_api_client/models/user_registration_info.py new file mode 100644 index 0000000..fb8e021 --- /dev/null +++ b/vcell_api_client/models/user_registration_info.py @@ -0,0 +1,102 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +from __future__ import annotations +import pprint +import re # noqa: F401 +import json + + +from typing import Any, ClassVar, Dict, List, Optional +from pydantic import BaseModel, StrictBool, StrictStr +from pydantic import Field +try: + from typing import Self +except ImportError: + from typing_extensions import Self + +class UserRegistrationInfo(BaseModel): + """ + UserRegistrationInfo + """ # noqa: E501 + user_id: Optional[StrictStr] = Field(default=None, alias="userID") + title: Optional[StrictStr] = None + organization: Optional[StrictStr] = None + country: Optional[StrictStr] = None + email_notification: Optional[StrictBool] = Field(default=None, alias="emailNotification") + __properties: ClassVar[List[str]] = ["userID", "title", "organization", "country", "emailNotification"] + + model_config = { + "populate_by_name": True, + "validate_assignment": True + } + + + def to_str(self) -> str: + """Returns the string representation of the model using alias""" + return pprint.pformat(self.model_dump(by_alias=True)) + + def to_json(self) -> str: + """Returns the JSON representation of the model using alias""" + # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead + return json.dumps(self.to_dict()) + + @classmethod + def from_json(cls, json_str: str) -> Self: + """Create an instance of UserRegistrationInfo from a JSON string""" + return cls.from_dict(json.loads(json_str)) + + def to_dict(self) -> Dict[str, Any]: + """Return the dictionary representation of the model using alias. + + This has the following differences from calling pydantic's + `self.model_dump(by_alias=True)`: + + * `None` is only added to the output dict for nullable fields that + were set at model initialization. Other fields with value `None` + are ignored. + """ + _dict = self.model_dump( + by_alias=True, + exclude={ + }, + exclude_none=True, + ) + return _dict + + @classmethod + def from_dict(cls, obj: Dict) -> Self: + """Create an instance of UserRegistrationInfo from a dict""" + if obj is None: + return None + + if not isinstance(obj, dict): + return cls.model_validate(obj) + + # raise errors for additional fields in the input + for _key in obj.keys(): + if _key not in cls.__properties: + raise ValueError("Error due to additional fields (not defined in UserRegistrationInfo) in the input: " + _key) + + _obj = cls.model_validate({ + "userID": obj.get("userID"), + "title": obj.get("title"), + "organization": obj.get("organization"), + "country": obj.get("country"), + "emailNotification": obj.get("emailNotification") + }) + return _obj + + diff --git a/vcell_api_client/py.typed b/vcell_api_client/py.typed new file mode 100644 index 0000000..e69de29 diff --git a/vcell_api_client/rest.py b/vcell_api_client/rest.py new file mode 100644 index 0000000..5d2c06a --- /dev/null +++ b/vcell_api_client/rest.py @@ -0,0 +1,232 @@ +# coding: utf-8 + +""" + VCell API + + VCell API + + The version of the OpenAPI document: 1.0.1 + Contact: vcell_support@uchc.com + Generated by OpenAPI Generator (https://openapi-generator.tech) + + Do not edit the class manually. +""" # noqa: E501 + + +import io +import json +import re +import ssl + +import urllib3 + +from vcell_api_client.exceptions import ApiException, ApiValueError + +RESTResponseType = urllib3.HTTPResponse + +class RESTResponse(io.IOBase): + + def __init__(self, resp) -> None: + self.response = resp + self.status = resp.status + self.reason = resp.reason + self.data = None + + def read(self): + if self.data is None: + self.data = self.response.data + return self.data + + def getheaders(self): + """Returns a dictionary of the response headers.""" + return self.response.headers + + def getheader(self, name, default=None): + """Returns a given response header.""" + return self.response.headers.get(name, default) + + +class RESTClientObject: + + def __init__(self, configuration) -> None: + # urllib3.PoolManager will pass all kw parameters to connectionpool + # https://github.com/shazow/urllib3/blob/f9409436f83aeb79fbaf090181cd81b784f1b8ce/urllib3/poolmanager.py#L75 # noqa: E501 + # https://github.com/shazow/urllib3/blob/f9409436f83aeb79fbaf090181cd81b784f1b8ce/urllib3/connectionpool.py#L680 # noqa: E501 + # Custom SSL certificates and client certificates: http://urllib3.readthedocs.io/en/latest/advanced-usage.html # noqa: E501 + + # cert_reqs + if configuration.verify_ssl: + cert_reqs = ssl.CERT_REQUIRED + else: + cert_reqs = ssl.CERT_NONE + + addition_pool_args = {} + if configuration.assert_hostname is not None: + addition_pool_args['assert_hostname'] = ( + configuration.assert_hostname + ) + + if configuration.retries is not None: + addition_pool_args['retries'] = configuration.retries + + if configuration.tls_server_name: + addition_pool_args['server_hostname'] = configuration.tls_server_name + + + if configuration.socket_options is not None: + addition_pool_args['socket_options'] = configuration.socket_options + + # https pool manager + if configuration.proxy: + self.pool_manager = urllib3.ProxyManager( + cert_reqs=cert_reqs, + ca_certs=configuration.ssl_ca_cert, + cert_file=configuration.cert_file, + key_file=configuration.key_file, + proxy_url=configuration.proxy, + proxy_headers=configuration.proxy_headers, + **addition_pool_args + ) + else: + self.pool_manager = urllib3.PoolManager( + cert_reqs=cert_reqs, + ca_certs=configuration.ssl_ca_cert, + cert_file=configuration.cert_file, + key_file=configuration.key_file, + **addition_pool_args + ) + + def request( + self, + method, + url, + headers=None, + body=None, + post_params=None, + _request_timeout=None + ): + """Perform requests. + + :param method: http request method + :param url: http request url + :param headers: http request headers + :param body: request json body, for `application/json` + :param post_params: request post parameters, + `application/x-www-form-urlencoded` + and `multipart/form-data` + :param _request_timeout: timeout setting for this request. If one + number provided, it will be total request + timeout. It can also be a pair (tuple) of + (connection, read) timeouts. + """ + method = method.upper() + assert method in [ + 'GET', + 'HEAD', + 'DELETE', + 'POST', + 'PUT', + 'PATCH', + 'OPTIONS' + ] + + if post_params and body: + raise ApiValueError( + "body parameter cannot be used with post_params parameter." + ) + + post_params = post_params or {} + headers = headers or {} + + timeout = None + if _request_timeout: + if isinstance(_request_timeout, (int, float)): + timeout = urllib3.Timeout(total=_request_timeout) + elif ( + isinstance(_request_timeout, tuple) + and len(_request_timeout) == 2 + ): + timeout = urllib3.Timeout( + connect=_request_timeout[0], + read=_request_timeout[1] + ) + + try: + # For `POST`, `PUT`, `PATCH`, `OPTIONS`, `DELETE` + if method in ['POST', 'PUT', 'PATCH', 'OPTIONS', 'DELETE']: + + # no content type provided or payload is json + content_type = headers.get('Content-Type') + if ( + not content_type + or re.search('json', content_type, re.IGNORECASE) + ): + request_body = None + if body is not None: + request_body = json.dumps(body) + r = self.pool_manager.request( + method, + url, + body=request_body, + timeout=timeout, + headers=headers, + preload_content=False + ) + elif content_type == 'application/x-www-form-urlencoded': + r = self.pool_manager.request( + method, + url, + fields=post_params, + encode_multipart=False, + timeout=timeout, + headers=headers, + preload_content=False + ) + elif content_type == 'multipart/form-data': + # must del headers['Content-Type'], or the correct + # Content-Type which generated by urllib3 will be + # overwritten. + del headers['Content-Type'] + r = self.pool_manager.request( + method, + url, + fields=post_params, + encode_multipart=True, + timeout=timeout, + headers=headers, + preload_content=False + ) + # Pass a `string` parameter directly in the body to support + # other content types than Json when `body` argument is + # provided in serialized form + elif isinstance(body, str) or isinstance(body, bytes): + request_body = body + r = self.pool_manager.request( + method, + url, + body=request_body, + timeout=timeout, + headers=headers, + preload_content=False + ) + else: + # Cannot generate the request from given parameters + msg = """Cannot prepare a request message for provided + arguments. Please check that your arguments match + declared content type.""" + raise ApiException(status=0, reason=msg) + # For `GET`, `HEAD` + else: + r = self.pool_manager.request( + method, + url, + fields={}, + timeout=timeout, + headers=headers, + preload_content=False + ) + except urllib3.exceptions.SSLError as e: + msg = "\n".join([type(e).__name__, str(e)]) + raise ApiException(status=0, reason=msg) + + return RESTResponse(r)