From 933ad3ed038001f347633bfdf75dd1b2751cf9cb Mon Sep 17 00:00:00 2001 From: taddallas Date: Sun, 3 Jan 2021 12:24:48 -0600 Subject: [PATCH] updates. version 1.0 ready for release --- DESCRIPTION | 6 +++--- NAMESPACE | 3 ++- R/negative.R | 3 +-- R/nvpassoc.R | 3 +-- man/negative.Rd | 3 +-- man/nvpassoc.Rd | 3 +-- 6 files changed, 9 insertions(+), 12 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 079d509..1f680bf 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,9 +1,9 @@ Package: InsectDisease Title: Ecological Database of the World's Insect Pathogens -Version: 0.1 -Author: David W. Onstad, Macroecology of Infectious Disease RCN +Version: 1.0 +Author: David Onstad Maintainer: Tad Dallas -Description: David Onstad from the USDA provided us with this USDA-gathered insect disease database. Files have been converted from SQL to csv, and ported into R for easy exploration and analysis. +Description: David Onstad from the USDA provided us with this USDA-gathered insect disease database, sometimes referred to as the "Ecological Database of the World's Insect Pathogens" or EDWIP. Files have been converted from SQL to csv, and ported into R for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease RCN for funding and support. Depends: R (>= 4.0.0) License: GPL-2 LazyData: true diff --git a/NAMESPACE b/NAMESPACE index d75f824..6ae9268 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1 +1,2 @@ -exportPattern("^[[:alpha:]]+") +# Generated by roxygen2: do not edit by hand + diff --git a/R/negative.R b/R/negative.R index 652d6b1..921951c 100644 --- a/R/negative.R +++ b/R/negative.R @@ -12,8 +12,7 @@ #' \item DateEntered. Date of initial data entry #' \item DateModified. Modification date of entry #' \item LogMaxDose. Dosage, in many different units -#' \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult, or -#' Egg\Larva\Pupa) +#' \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult) #' \item Host. Host species examined #' \item Group. Pathogen group (e.g. viruses) #' \item HighTaxon. General classification of pathogen (e.g. DNA virus) diff --git a/R/nvpassoc.R b/R/nvpassoc.R index f68771b..6c83fa3 100644 --- a/R/nvpassoc.R +++ b/R/nvpassoc.R @@ -14,8 +14,7 @@ #' \item Host. Host species examined #' \item Order. Host taxonomic order. #' \item Family. Host taxonomic family. -#' \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult, or -#' Egg\Larva\Pupa) +#' \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult) #' \item HostTissueInfected. Host tissue infected #' \item FieldOrLab. Was this a field or lab tested association? #' \item Country. What country did the interaction occur in? diff --git a/man/negative.Rd b/man/negative.Rd index e394b6d..8a86b78 100644 --- a/man/negative.Rd +++ b/man/negative.Rd @@ -21,8 +21,7 @@ pathogens do not infect certain hosts. \item DateEntered. Date of initial data entry \item DateModified. Modification date of entry \item LogMaxDose. Dosage, in many different units - \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult, or - Egg\Larva\Pupa) + \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult) \item Host. Host species examined \item Group. Pathogen group (e.g. viruses) \item HighTaxon. General classification of pathogen (e.g. DNA virus) diff --git a/man/nvpassoc.Rd b/man/nvpassoc.Rd index 10f03ba..4f879cc 100644 --- a/man/nvpassoc.Rd +++ b/man/nvpassoc.Rd @@ -24,8 +24,7 @@ as follows: \item Host. Host species examined \item Order. Host taxonomic order. \item Family. Host taxonomic family. - \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult, or - Egg\Larva\Pupa) + \item HostStageTested. Host stage exposed to pathogen (e.g. Larvae, Nymph, Adult) \item HostTissueInfected. Host tissue infected \item FieldOrLab. Was this a field or lab tested association? \item Country. What country did the interaction occur in?