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Experiment Workspace: Expt

Expt is the workspace for our experiments. Initially, it contains the following 4 main folders, We breifly give a overview of each of them, and the subfolders in them.

psyc-scripts

It contains all the bash scripts that organize the running of our

experiments. Worth to menthion, our principle of running neural experiments is seperating the reciept from its cook tool. Hence, all cook tools are placed in psyc-scripts/commands/, and all cook receipts are placed in psyc-scripts/configs.

During developing, build the core of cook tools in tensorflow code directory, and then wrap that as a configurable bash script in psyc-scrpts/commands. Then, write various receipts by setting different switch or hyperparamters. Finally, a cook tool(command) feeded by a receipt(config) will build a model as you wish.

Worth to mention, a `env.sh` in commands folder is a special

initialization code, which will set the important global variables that will used in our model. It will be fine to run the code without any customization on env.sh However, please check the details in Expt/commands/env.sh script, which contains the global variables in our model. Especially, please understand the usage for the ROOT_DIR, META_DATA_CONFIG, and RO_DATA_DIR, DATA_DIR.

stats_scripts

Some pythong scripts are useful to monitor and make statistics for the training log, which can find the current best performance over each label, each metric, and each aggregation methion.

data

  • psyc_ro
It is a folder for read-only data, once data generated in this

folder, it will keep unchanged, e.g. glove pretrained embedding, original data set, data splits etc.

   `meta_data_config` in it is about some meta configs for our

data, due to data privacy, we only can publish the session ids used to generate our train/dev/test splits. This folder will configure in Expt/psyc-scripts/commands/env.sh, and will be used by trans.sh for data transformation. Please use those ids for dataset splitting, so that the performance can be directly comparable.

  • psyc

It the proprocessed data for traning, including tokenization, prepared training data.

workdir

It is folder to store all the experiment results organized by per folder one modeling receipt.

  • training.log or training_restore.log

generated from ./train.sh or ./train_restore.sh, it shows all the training logs. By using stats_scripts above, you can analyze the log in realtime.

# for analyzing training log for Patient(client) models
python $ROOT_DIR/Expt/stats_scripts/stats_P.py train.log

# for analyzing training log for Therapist models during resumed training.
python $ROOT_DIR/Expt/stats_scripts/stats_T.py traini_restore.log
  • models
models will save all the best models with repsect to each metrics to evaluate.

model prefix = $ALGO + sub_model_prefix.

$ALGO is just a name to identify your model. see tensorflow/classes/config_reader.py for more details. $sub_model_prefix is relared to the metrics we used for evaluation, which follows a pattern "_A_B"

# A can be in {P, R, F1, R@K}
# B can be in {macro, weighted_macro, micro} and all MISC labels.

Hence, sub_model_prefix can be _F1_macro, that is what we used for our performance evaluation.

  • results and results_on_test

    results folder will list all the genenerated output predictions file. What's more, confusion matrix and its matlab figures will also genenerated there. results_on_test will show the result on test set.

  • summary

This folder is for writing event and all kinds summaries, that can be read by tensorboard.