Merge pull request #162 from uclahs-cds/jieunoh-update-to-ver-7.3.1

Update version in CHANGELOG.md and methods.config to 7.3.1

Author: graceooh

CHANGELOG.md

@@ -8,9 +8,11 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
+
+## [7.3.1] - 2022-01-14
 ### Changed
 - Update GATK to 4.2.4.1 to address Log4j vulnerabilities (https://github.com/advisories/GHSA-8489-44mv-ggj8, https://github.com/advisories/GHSA-p6xc-xr62-6r2g)
-- Update Picard version to 2.26.10 to address Log4j moderate vulnerability (https://github.com/advisories/GHSA-8489-44mv-ggj8)
+- Update Picard version to 2.26.10 to address Log4j vulnerabilities (https://github.com/advisories/GHSA-8489-44mv-ggj8)
 
 ### Added
 - Add F32 config file

metadata.yaml

@@ -6,6 +6,6 @@ Contributors: ["Benjamin Carlin", "Chenghao Zhu", "Aaron Holmes", "Takafumi Yama
 Languages: ["Nextflow", "Docker"]
 Dependencies: ["Java", "Nextflow", "Docker"]
 References: "https://uclahs.box.com/s/qfzr99sc8ntmfddn30ii62wx4273utoz"
-Tools: ["BWA-MEM2 2.2.1", "HISAT2 2.2.1", "SAMTools 1.12", "Picard Tools 2.23.3"]
+Tools: ["BWA-MEM2 2.2.1", "HISAT2 2.2.1", "SAMTools 1.12", "Picard Tools 2.26.10"]
 Engineering_Owner: "Aaron Holmes"
 Scientific_Owner: "Takafumi Yamaguchi"

pipeline/config/methods.config

@@ -5,7 +5,7 @@ manifest {
     name = "align-DNA"
     author = "Benjamin Carlin; Chenghao Zhu; Aaron Holmes; Yash Patel; Nicole Zeltser; Jieun Oh"
     description = "alignment pipeline for paired fastqs DNA samples"
-    version = "7.3.0"
+    version = "7.3.1"
     }
 
 params {