Merge pull request #248 from uclahs-cds/jarbet-release

release 9.0.0

Author: jarbet

CHANGELOG.md

@@ -9,6 +9,11 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 ## [Unreleased]
 
+### Changed
+
+### Added
+
+## [9.0.0] - 2022-10-28
 ### Changed
 - Change to github packages instead of dockerhub
 - Standardize intermediate and output filenames using [generate_standardized_filename](https://github.com/uclahs-cds/pipeline-Nextflow-module/tree/main/modules/common/generate_standardized_filename)

metadata.yaml

@@ -6,6 +6,6 @@ Contributors: ["Benjamin Carlin", "Chenghao Zhu", "Aaron Holmes", "Takafumi Yama
 Languages: ["Nextflow", "Docker"]
 Dependencies: ["Java", "Nextflow", "Docker"]
 References: "https://uclahs.box.com/s/qfzr99sc8ntmfddn30ii62wx4273utoz"
-Tools: ["BWA-MEM2 2.2.1", "HISAT2 2.2.1", "SAMTools 1.12", "Picard Tools 2.26.10"]
+Tools: ["BWA-MEM2 2.2.1", "HISAT2 2.2.1", "SAMTools 1.15.1", "Picard Tools 2.26.10"]
 Engineering_Owner: "Aaron Holmes"
 Scientific_Owner: "Takafumi Yamaguchi"

nextflow.config

@@ -2,5 +2,5 @@ manifest {
     name = "align-DNA"
     author = "Benjamin Carlin; Chenghao Zhu; Aaron Holmes; Yash Patel; Nicole Zeltser; Jieun Oh; Jaron Arbet"
     description = "alignment pipeline for paired fastqs DNA samples"
-    version = "8.1.0"
+    version = "9.0.0"
     }