Release v10.1.0 (#314)

* Bump version for release

* Autofix Nextflow configuration regression tests

---------

Co-authored-by: yashpatel6 <[email protected]>

Author: yashpatel6

CHANGELOG.md

@@ -8,6 +8,8 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
+
+## [10.1.0] - 2024-05-15
 ### Changed
 - Update Picard version to 3.1.1
 - Update BWA-MEM2, HISAT2 images to use SAMTools version 1.17

nextflow.config

@@ -2,5 +2,5 @@ manifest {
     name = "align-DNA"
     author = "Benjamin Carlin; Chenghao Zhu; Aaron Holmes; Yash Patel; Nicole Zeltser; Jieun Oh; Jaron Arbet"
     description = "alignment pipeline for paired fastqs DNA samples"
-    version = "10.0.0"
+    version = "10.1.0"
     }

test/configtest-F16.json

@@ -34,7 +34,7 @@
       "author": "Benjamin Carlin; Chenghao Zhu; Aaron Holmes; Yash Patel; Nicole Zeltser; Jieun Oh; Jaron Arbet",
       "description": "alignment pipeline for paired fastqs DNA samples",
       "name": "align-DNA",
-      "version": "10.0.0"
+      "version": "10.1.0"
     },
     "params": {
       "aligner": [
@@ -73,15 +73,15 @@
           }
         ]
       },
-      "log_output_dir": "/tmp/outputs/align-DNA-10.0.0/a_mini_n2_picard/log-align-DNA-10.0.0-19970704T165655Z/",
+      "log_output_dir": "/tmp/outputs/align-DNA-10.1.0/a_mini_n2_picard/log-align-DNA-10.1.0-19970704T165655Z/",
       "make_duplicates": true,
       "mark_duplicates": true,
       "max_cpus": "16",
       "max_memory": "31 GB",
       "min_cpus": "1",
       "min_memory": "1 MB",
       "output_dir": "/tmp/outputs",
-      "output_dir_base": "/tmp/outputs/align-DNA-10.0.0/a_mini_n2_picard",
+      "output_dir_base": "/tmp/outputs/align-DNA-10.1.0/a_mini_n2_picard",
       "picardtools_version": "3.1.1",
       "pipeval_version": "4.0.0-rc.2",
       "proc_resource_params": {
@@ -285,15 +285,15 @@
     },
     "report": {
       "enabled": true,
-      "file": "/tmp/outputs/align-DNA-10.0.0/a_mini_n2_picard/log-align-DNA-10.0.0-19970704T165655Z//nextflow-log/report.html"
+      "file": "/tmp/outputs/align-DNA-10.1.0/a_mini_n2_picard/log-align-DNA-10.1.0-19970704T165655Z//nextflow-log/report.html"
     },
     "timeline": {
       "enabled": true,
-      "file": "/tmp/outputs/align-DNA-10.0.0/a_mini_n2_picard/log-align-DNA-10.0.0-19970704T165655Z//nextflow-log/timeline.html"
+      "file": "/tmp/outputs/align-DNA-10.1.0/a_mini_n2_picard/log-align-DNA-10.1.0-19970704T165655Z//nextflow-log/timeline.html"
     },
     "trace": {
       "enabled": true,
-      "file": "/tmp/outputs/align-DNA-10.0.0/a_mini_n2_picard/log-align-DNA-10.0.0-19970704T165655Z//nextflow-log/trace.txt"
+      "file": "/tmp/outputs/align-DNA-10.1.0/a_mini_n2_picard/log-align-DNA-10.1.0-19970704T165655Z//nextflow-log/trace.txt"
     },
     "workDir": "/scratch/8543"
   }