Add requirements.txt to specify project dependencies

Refactor .gitignore to include data/*.fasta and data/uniprot_taxon

Refactor README.md to update project name and dependencies

Refactor README.md to update project name and dependencies

Refactor code to add support for ProSST-2048 model and alignment matrix

Refactor data_format_convert.sh and data_format_convert.py scripts

Refactor file paths and variable names in get_strcu_seq.sh and get_st…

Refactor .gitignore and add new file get_substitutions.sh and update …

Refactor README.md and environment.yml to update dependencies and paths

Refactor README.md and environment.yml

Refactor compute_fitness.py to update model name and output model nam…

Refactor README.md

Update README

Refactor README.md to update project introduction, add result images,…

Refactor scripts and README file

Add proteingym processed data for evaluation

Refactor README.md to update project introduction and add result images

Update memory allocation in environment configuration

Update error assert and some bugs

Refactor get_struc_seq.py to support variable vocabulary size

Refactor environment.yml to update package dependencies and channels

Refactor compute_fitness.py to improve alignment matrix calculation a…

Refactor select_msa.py to handle multiple protein names and improve f…

Refactor file paths and update evcouplings script

Refactor file path and add select msa

Refactor file path for evcouplings.pbs script

Refactor compute_fitness.py to improve alignment matrix calculation

Add jackhmmer, evcouplings code to get aa seq MSA

Refactor file path for get_structure_aln.sh script

Refactor compute_fitness.sh script and add zero-shot experiments